Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG30.5% 186.7 / 12.9 96T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (20/46);  new base G (29/0);  total (50/46)
Fisher's exact test for biased strand distribution p-value = 1.40e-11
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 104 total aligned reads displayed.

AGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAC  >  NC_000913/4568367‑4568643
                                                                                                                                           |                                                                                                                                             
  gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑Taaaa                                                                                                                                           <  2:860078/140‑1 (MQ=255)
    gCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑Taaaaaa                                                                                                                                         >  2:1124875/1‑140 (MQ=255)
       aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACg                                                                                                                                      <  2:138158/140‑1 (MQ=255)
       aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACg                                                                                                                                      <  1:172938/140‑1 (MQ=255)
       aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACg                                                                                                                                      <  2:706764/140‑1 (MQ=255)
            gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCa                                                                                                                                 <  1:159165/140‑1 (MQ=255)
            gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCa                                                                                                                                 <  1:59411/140‑1 (MQ=255)
             aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑AAAAAAAACGTGGCAt                                                                                                                                >  1:810948/1‑140 (MQ=255)
             aCATCGGCATTAAAATCACATACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAAAGTGGCaa                                                                                                                                >  1:202076/1‑139 (MQ=255)
               aTCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATaa                                                                                                                              <  1:1211757/140‑1 (MQ=255)
               aTCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATaa                                                                                                                              <  1:929426/140‑1 (MQ=255)
                   gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAATGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATaacaaa                                                                                                                          >  1:898877/1‑140 (MQ=255)
                   gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATaacaaa                                                                                                                          >  1:575116/1‑140 (MQ=255)
                    cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATaacaaac                                                                                                                         <  2:275152/140‑1 (MQ=255)
                    cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAAAGTGGCATaacaaaa                                                                                                                         >  1:195587/1‑139 (MQ=255)
                     aTTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATaacaaaca                                                                                                                        >  1:928032/1‑140 (MQ=255)
                     aTTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATaacaaaca                                                                                                                        <  2:837717/140‑1 (MQ=255)
                         aaaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTc                                                                                                                    <  1:1178177/140‑1 (MQ=255)
                         aaaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAAAGAGGCATAAAAAAAAAATc                                                                                                                    >  2:195188/1‑140 (MQ=255)
                          aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                   <  1:484903/140‑1 (MQ=255)
                              aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGt                                                                                                               <  1:1200817/140‑1 (MQ=255)
                              aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAAAGTGGGATAAAAAACAACTCCTTGt                                                                                                               >  1:958134/1‑140 (MQ=255)
                                 tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTAGCATAACAAAAAAATCCTTTT‑CCg                                                                                                           >  1:375991/1‑140 (MQ=255)
                                   ccACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGga                                                                                                         <  2:37830/140‑1 (MQ=255)
                                    cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAGACGTGGCATAACAAACAACTCCTTGT‑CCGgag                                                                                                        <  2:509101/140‑1 (MQ=255)
                                      caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAAAGTGGGATAACAAAAAACACCTTTT‑CCGGAG‑aa                                                                                                     >  1:915197/1‑140 (MQ=255)
                                        ttAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AAcc                                                                                                   <  2:575116/140‑1 (MQ=255)
                                          aaTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAACGCGGCATAAAAAAAAACTCCTTTG‑CCGGAG‑GAgccc                                                                                                 >  2:554909/1‑140 (MQ=255)
                                              aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAAAGTGGCATAACAAAAAAACCCTTTT‑CCCGGG‑AACCCCAAcc                                                                                             >  2:642214/1‑139 (MQ=255)
                                              aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAAAGGGGGATAAAAAACAAATCCTTTT‑CCGGAG‑AACCCCAACg                                                                                             >  1:718497/1‑140 (MQ=255)
                                                cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGCTAAAAAAACCT‑GCATAAAAAAAAACCCCTTGT‑CCGGAG‑CACCCCCACagg                                                                                           >  1:751813/1‑140 (MQ=255)
                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCCTAACAAACAACCCCTTGT‑CCGGAA‑AACCCCAAAgggg                                                                                          >  1:557970/1‑140 (MQ=255)
                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAACGTGGCATAACAAACAAATCCTTGT‑CCGGAG‑AACCCCAACgggg                                                                                          >  1:1222392/1‑140 (MQ=255)
                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAACGTGGCATAAAAAACAAATCCTTGT‑CCGGAG‑AACCCCCACgggg                                                                                          >  1:499726/1‑140 (MQ=255)
                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAAAGGGGGAAAACAAAAAACCCCCTTT‑CCCGGG‑GACCCCAACgggg                                                                                          >  2:1156901/1‑140 (MQ=255)
                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAAAGAGGCATAACAAACAACACCTTGT‑CCGGAG‑AAACCCAACgggg                                                                                          >  2:842520/1‑140 (MQ=255)
                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑CAAAAAAAAGTGGCGTAACAAACAACCCCCTTT‑CCGGAG‑AACCCCAAAgggg                                                                                          >  1:862691/1‑140 (MQ=255)
                                                       tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAATGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACg                                                                                    <  2:898877/140‑1 (MQ=255)
                                                       tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACg                                                                                    <  1:252780/140‑1 (MQ=255)
                                                       tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACg                                                                                    <  1:947445/140‑1 (MQ=255)
                                                       tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACg                                                                                    <  1:1156901/140‑1 (MQ=255)
                                                         gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGG‑TAAAAAAAC‑CGGCATAAAAAACAACTCCTTGTCCCGGGG‑AACCCC‑ACGGGGGAAACGaa                                                                                  >  2:845563/1‑140 (MQ=255)
                                                         gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAAAGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGaa                                                                                  >  1:54586/1‑140 (MQ=255)
                                                         gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAATGTGGCATAACAAAAAAATCCTTTT‑CCGGAG‑GATCCCAACCGGGAAAACGaa                                                                                  >  1:489620/1‑140 (MQ=255)
                                                         gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAACGTGGCATAACAAACAACTCCTTTT‑CCGGAG‑AAACCCAACGGGGAAAAAGaa                                                                                  >  1:332576/1‑140 (MQ=255)
                                                         gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAAAGTGGCATAAAAAAAAACTCCCTTT‑CCGGAG‑AACCCCCACGGGGgaaaaaaa                                                                                  >  2:387902/1‑136 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GTG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGaaa                                                                                 <  2:1003721/140‑1 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAAAAGGGCATAAAAAAAAACCCCTTGT‑CCGGGG‑AACCCCAAAGGGGaaaaaaaaa                                                                                 >  2:337565/1‑135 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAAAGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAAAGaaa                                                                                 >  1:1107719/1‑140 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAAAGGGGCATAACAAACAAATCCTTGT‑CCGGGG‑AACCCCAACGGGGGAAAAGaaa                                                                                 >  2:402743/1‑140 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAAAAGGGGATAAAAAAAAACTCCCTGT‑TCGGAGAAACCCCACCGGGGgaaagaaa                                                                                  >  2:296324/1‑136 (MQ=255)
                                                               aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAATAAAAGAGGCATAAAAAACAAATCCTTGT‑CGGGAG‑AGACCCCACGGGGGAAACGAAAATcca                                                                            >  2:1092861/1‑138 (MQ=255)
                                                               aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCaa                                                                            <  2:296494/140‑1 (MQ=255)
                                                               aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAAAGGGGCATAACAAAAAACTCCTTGT‑CCGGGG‑AACCCCAACGGGGGAAACGAAAATCaa                                                                            >  2:407387/1‑140 (MQ=255)
                                                               aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAACGTGGCATAAAAAACAACTCCTTGT‑CCGGAG‑AACCCCCACGGGGGAAAAGAAAATCaa                                                                            >  2:480521/1‑140 (MQ=255)
                                                               aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAAAGTGGCATAACAAACAACCCCTTTT‑CCGGAG‑AACCCCAACGGGGGAAAACAAAATCaa                                                                            >  1:244490/1‑140 (MQ=255)
                                                               aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAAAGTGGCATAACAAAAAAATCCTTGT‑CCGGAG‑AACCCCAACGGGGGAAAAGAAAATCaa                                                                            >  1:628606/1‑140 (MQ=255)
                                                                   gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TTAAAAAAAAGGGCATAACAAAAAACTCCTTGT‑CCCGAG‑AACCCCCACAGGGAAAACGAAAATTAAAAcc                                                                        >  2:899662/1‑140 (MQ=255)
                                                                   gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TGAAAAAAAACGGCATAACAAACAAACCCCTTT‑TCGGGG‑AACCCCAACGGGGGAAAAGAAACTCAATAcc                                                                        >  2:846618/1‑140 (MQ=255)
                                                                   gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAAAAAGGCAAAAAAAACAACACCTTGT‑CCGGGG‑GAACCCCACGGGGGAAACGAAAATCAATaac                                                                        >  2:152198/1‑138 (MQ=255)
                                                                    tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGGAAAAGAAATTCAATaacc                                                                       >  1:339457/1‑137 (MQ=255)
                                                                    tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAAAGTGGCATAACAAACAACTCCTTTT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATAccc                                                                       >  1:435696/1‑139 (MQ=255)
                                                                    tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAAAGATGGATAAAAAAAAAATCCTTGT‑CCGGTG‑AAGACCAACGGGGGAAAAAAAATTGAAAACCg                                                                       >  2:1074589/1‑140 (MQ=255)
                                                                      gACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAACAGGGCATAAAAAAAAAACCCTTGT‑CCGGAG‑AACCCCCACGGGGGAAAAGAAAATCAAAAACGTc                                                                     >  2:3985/1‑140 (MQ=255)
                                                                          gATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AGCCCCAACGGGGAAAACGAAATTCAATACCGTCGGTa                                                                 <  1:713746/140‑1 (MQ=255)
                                                                          gATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTa                                                                 <  1:495477/140‑1 (MQ=255)
                                                                           aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTaa                                                                <  2:503911/140‑1 (MQ=255)
                                                                           aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAAAAGGGCATAAAAAAAAACTCCTTGT‑CCGGAG‑GACCCCCACCGGGGAAAAGAAAATCAAAACCGTCGGTaa                                                                >  2:559152/1‑140 (MQ=255)
                                                                                cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACg                                                           <  2:368488/140‑1 (MQ=255)
                                                                                 agcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAAAGGGGCATAAAAAACAACTCCTTGT‑CCGGAG‑AAACCCAACGGGGAAAACGAAAATCAATACCCTCGGGAATGACGa                                                          >  2:837146/1‑140 (MQ=255)
                                                                                  gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAAAGGGGCATAAAAAAAAACACCTTTT‑CCGGGG‑AACCCCCACGGGGGAAAAGAAAATCAATACCCTCGGTAAAGACGaa                                                         >  2:501727/1‑140 (MQ=255)
                                                                                     aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                      <  1:501727/140‑1 (MQ=255)
                                                                                     aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                      <  1:402743/140‑1 (MQ=255)
                                                                                     aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAAAGGGGCATAAAAAACAAATCCTTTT‑CCGGAG‑AAACCCCACGGGGGAAAAGAAAATCAAAACCCTCGGGAAAGAAGAAAgg                                                      >  2:1233172/1‑140 (MQ=255)
                                                                                      aGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAAAGTGGCACAAGAAAAAACTCCTTTT‑TCGGAA‑AAAACCAAATGGGAAAACGAAAATCAAAACCGTCGGTAATTAAGaaaaga                                                     >  2:1184643/1‑137 (MQ=255)
                                                                                        tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg                                                   <  1:1092861/140‑1 (MQ=255)
                                                                                        tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAAAGTGGCATAAAAAAAAACACCTTTT‑CCGGAG‑AACCCCCACGGGGGAAAAGAAAATCAAAAACGTCGGTAAAGACGAAAAGCAg                                                   >  2:143245/1‑140 (MQ=255)
                                                                                          aTACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGt                                                 <  1:1074589/140‑1 (MQ=255)
                                                                                           tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAAAGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCCACGGGGGAAACGAAAATCAATACCGTCGGGAATGACGAAAGGCAgggg                                                >  2:102016/1‑138 (MQ=255)
                                                                                              aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                             <  1:554909/140‑1 (MQ=255)
                                                                                                      cGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAAc                                     <  2:446991/140‑1 (MQ=255)
                                                                                                      cGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑GAAAAAAAAGTGGGGTAAAAAACAACTCCCTGT‑CCGGAG‑AACCCCAAAGGGGAAAAAGAAAATCAATAACACCGGTAATGAAGAAAAGCAGGGGAGAAGGGCaaa                                     >  2:1219518/1‑139 (MQ=255)
                                                                                                        ccATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                   <  1:407387/140‑1 (MQ=255)
                                                                                                           tCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                                <  2:928032/140‑1 (MQ=255)
                                                                                                                aaaaaCAGCGTGGCGGCATGGC‑GGG‑TAAAAAAAAGTGGCATAAAAAAAAAATCCTTGT‑CCGGGG‑AAACCCAACCGGGAAAAAGAAAATCAATACCCTCGGTAAATACGAAAAGGAGGTGGGAAAGGGAACGAGAATGCaa                           >  2:606862/1‑140 (MQ=255)
                                                                                                                  aaaCAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAAt                         <  2:244490/140‑1 (MQ=255)
                                                                                                                      aGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                     <  1:837146/140‑1 (MQ=255)
                                                                                                                      aGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                     <  2:856055/140‑1 (MQ=255)
                                                                                                                       gCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt                    <  1:846618/140‑1 (MQ=255)
                                                                                                                       gCGTGGCGGCATGGC‑GGG‑GAAAAAAAAGTGGGATAAAAAACAAATCCTTGT‑CCGGGG‑AACCCCAACGGGGGAAAAGAAATTCAATACCGTCGGTAATGAAGAAAAGCAGGGGGGAAGGGGAACGGGAATGGAAAAGTaat                    >  2:1154550/1‑138 (MQ=255)
                                                                                                                        cGTGGCGGCATGGC‑GGG‑TAAAAAAAAGTGGGATAACAAAAAACTCCTTGT‑CCGGGG‑AACCCCCACCGGGGAAACGAAATTCAATACCGTCGGTAATGACGAAAAGCAGGGGAGAAAGGCAACGAGAATGGAAATGTACTg                   >  2:514956/1‑140 (MQ=255)
                                                                                                                              ggcATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTc             <  1:296324/140‑1 (MQ=255)
                                                                                                                                 aTGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg          <  1:277296/140‑1 (MQ=255)
                                                                                                                                 aTGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg          <  1:1233172/140‑1 (MQ=255)
                                                                                                                                 aTGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg          <  2:906452/140‑1 (MQ=255)
                                                                                                                                   ggC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa        <  1:1124875/140‑1 (MQ=255)
                                                                                                                                       ggg‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATc     <  2:810948/140‑1 (MQ=255)
                                                                                                                                           tAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAc  <  1:143245/140‑1 (MQ=255)
                                                                                                                                           tAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCATCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAc  <  2:557970/140‑1 (MQ=255)
                                                                                                                                           tAAAAAAACGTAGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAc  <  2:375991/140‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                             
AGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGG‑TAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAC  >  NC_000913/4568367‑4568643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑