New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2518036 =	78 (0.840)	6 (0.090) +TGCACCCAGCAAACTTGGTACGTAAACGCATCGTGGGGCTA	3/196	7.1	10.4%	intergenic (‑204/+5)	pdeA/alaX	putative c‑di‑GMP phosphodiesterase PdeA/tRNA‑Ala
	?	NC_000913	2520938 =	69 (0.750)					noncoding (8/76 nt)	valU	tRNA‑Val
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CATCGTGGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2518122‑2518036 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGT  >  NC_000913/2520938‑2520994                                                                                        |||||||||||||||||||||||||||||||||||||||||                                                          gcatgcaGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAATTTTGCACCCAGCAAACTTGGTACGTAAACGCATCGTGGGGCTATAGCTCAGCTGG                                               >  1:193089/8‑140      aGGGGCTCTAGTTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGTCAGCGGTTCGACCCCGCTTAGCTCCACCAAATTTTGCCCCCAGCAAACTTGGTACGTAAACGCGTCGTGGGGCTATAGCTCAGCTGGGAGAG                                          <  2:1002597/139‑1       GGGGCTATAGTTCAGCTGGGAGAGCGCTTGGATGGTATGCAAGAGGTCAGCGGTTCGATACCGCTTAGCTCCAACAAATTTTGCACCCAGGAAACTTGGTACGTAAACGCATCGTGGGGCTATAGTTCAGCTGGGAGAGC                                         <  2:1355855/140‑1                              GCGCTTGCATGGCATGCAAGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAATTTTGCACCCAGCAAACTTGGTACGTAAACGCATCGTGGGGCTATAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTC                  >  1:1306529/1‑140                                    GCATGGCATGCAAGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAATTTTGCACCCAGCAAACTTGGTACGTAAACGCATCGTGGGGCTATAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGT            >  1:416824/1‑140                                              CAAGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAATTTTGCACCCAGCAAACTTGGTACGTAAACGCATCGTGGGGCTATAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGT  <  2:1306529/140‑1                                                                                        |||||||||||||||||||||||||||||||||||||||||                                                          CATCGTGGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGTCAGCGGTTCGATCCCGCTTAGCTCCACCAAATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2518122‑2518036 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGT  >  NC_000913/2520938‑2520994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.