BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3653230	NA (NA)	110 (1.190)	63/278	0.1	98.2%	noncoding (1/1195 nt)	IS5	repeat region
*	?	NC_000913	= 3766089	2 (0.020)	110 (1.190)	63/278	0.1	98.2%	coding (3907/4134 nt)	rhsA	rhs element protein RhsA

Only 100 of 104 total aligned reads displayed.

CTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGC  >  NC_000913/3653104‑3653367

cTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTa                                                                                                                               <  2:468675/140‑1 (MQ=35)

       gACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAGCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑ttttttt                                                                                                                       <  1:936115/140‑1 (MQ=255)

       gACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑ttttttt                                                                                                                       <  1:392298/140‑1 (MQ=255)

           gcgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACAt                                                                                                                   <  1:173560/140‑1 (MQ=255)

           gcgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACAt                                                                                                                   <  1:1123754/140‑1 (MQ=255)

            cgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATa                                                                                                                  <  1:268377/140‑1 (MQ=255)

             gcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATaa                                                                                                                 >  2:68638/1‑140 (MQ=255)

                 aCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGaa                                                                                                             <  1:717370/140‑1 (MQ=255)

                 aCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGaa                                                                                                             >  2:496049/1‑140 (MQ=255)

                 aCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGaa                                                                                                             <  1:1072305/140‑1 (MQ=255)

                 aCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGaa                                                                                                             <  1:1399472/140‑1 (MQ=255)

                 aCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGaa                                                                                                             <  1:1311941/140‑1 (MQ=255)

                     ctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACAcc                                                                                                         <  1:768522/140‑1 (MQ=255)

                     ctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACAcc                                                                                                         <  2:1537079/140‑1 (MQ=255)

                     ctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACAcc                                                                                                         <  1:1120955/140‑1 (MQ=255)

                      tgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACAccc                                                                                                        <  1:29183/140‑1 (MQ=255)

                        aaTTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTa                                                                                                      <  1:962078/140‑1 (MQ=255)

                        aaTTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTa                                                                                                      >  1:923082/1‑140 (MQ=255)

                           tCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTAccc                                                                                                   <  1:87821/140‑1 (MQ=255)

                             aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTATTTTTTTTACATAAAGAACACCCTAcccc                                                                                                  >  2:96960/1‑140 (MQ=255)

                             aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTAccccc                                                                                                 <  2:312625/140‑1 (MQ=255)

                             aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTAccccc                                                                                                 >  1:767448/1‑140 (MQ=255)

                             aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTAccccc                                                                                                 <  1:575956/140‑1 (MQ=255)

                             aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTAccccc                                                                                                 <  1:476727/140‑1 (MQ=255)

                             aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTAccccc                                                                                                 >  1:393359/1‑140 (MQ=255)

                             aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTAccccc                                                                                                 <  1:1156191/140‑1 (MQ=255)

                             aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTAccccc                                                                                                 <  2:1102170/140‑1 (MQ=255)

                             aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTAccccc                                                                                                 <  1:1425848/140‑1 (MQ=255)

                             aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTAccccc                                                                                                 <  1:1358620/140‑1 (MQ=255)

                              cTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGTGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCa                                                                                                <  1:678644/140‑1 (MQ=255)

                              cTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCa                                                                                                <  1:1131389/140‑1 (MQ=255)

                               tGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCaa                                                                                               >  2:208939/1‑140 (MQ=255)

                                gTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCaaa                                                                                              <  1:325075/140‑1 (MQ=255)

                                gTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCaaa                                                                                              <  2:1212578/140‑1 (MQ=255)

                                  cGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAAtt                                                                                            >  2:1088042/1‑140 (MQ=255)

                                    gCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATtat                                                                                          >  2:1004037/1‑140 (MQ=255)

                                      gAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATtatat                                                                                        <  2:645437/140‑1 (MQ=255)

                                       aaGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATtatata                                                                                       <  2:144915/140‑1 (MQ=255)

                                         ggTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATaaa                                                                                     >  2:232874/1‑140 (MQ=255)

                                         ggTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATaaa                                                                                     <  1:203233/140‑1 (MQ=255)

                                          gTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGACGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAg                                                                                    <  2:1479781/140‑1 (MQ=255)

                                             aGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATg                                                                                 >  1:688915/1‑140 (MQ=255)

                                                tgatgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGAc                                                                              <  1:295485/140‑1 (MQ=255)

                                                tgatgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGAc                                                                              <  1:1037703/140‑1 (MQ=255)

                                                tgatgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGAc                                                                              <  2:601542/140‑1 (MQ=255)

                                                 gatgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACa                                                                             >  1:834744/1‑140 (MQ=255)

                                                  atgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACaa                                                                            >  2:725915/1‑140 (MQ=255)

                                                  atgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACaa                                                                            >  1:112937/1‑140 (MQ=255)

                                                   tgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCGTACCCCCAAATTATATAAAGATGGACAat                                                                           >  1:890891/1‑140 (MQ=255)

                                                    gaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAata                                                                          >  2:1554425/1‑140 (MQ=255)

                                                    gaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAata                                                                          >  2:883350/1‑140 (MQ=255)

                                                       tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCt                                                                       >  2:1007936/1‑140 (MQ=255)

                                                         atgatgAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTg                                                                     >  2:471718/1‑140 (MQ=255)

                                                         atgatgAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTg                                                                     >  1:180559/1‑140 (MQ=255)

                                                          tgatgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGa                                                                    >  2:61491/1‑140 (MQ=255)

                                                                 cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGacaaacaa                                                             >  1:51268/1‑140 (MQ=255)

                                                                 cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGacaaacaa                                                             >  2:744359/1‑140 (MQ=255)

                                                                 cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGacaaacaa                                                             >  2:747304/1‑140 (MQ=255)

                                                                 cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGacaaacaa                                                             >  2:382047/1‑140 (MQ=255)

                                                                 cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGacaaacaa                                                             >  1:123321/1‑140 (MQ=255)

                                                                 cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGacaaacaa                                                             >  1:352769/1‑140 (MQ=255)

                                                                     gTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCg                                                         <  2:524734/140‑1 (MQ=255)

                                                                     gTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCg                                                         <  1:232874/140‑1 (MQ=255)

                                                                           tGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGtt                                                   >  1:912985/1‑140 (MQ=255)

                                                                            ggCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑‑TTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTa                                                 >  1:1495509/1‑140 (MQ=255)

                                                                              cTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTAt                                                >  1:377986/1‑140 (MQ=255)

                                                                              cTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTAt                                                >  1:554267/1‑140 (MQ=255)

                                                                              cTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTACATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTAt                                                >  2:925129/1‑140 (MQ=255)

                                                                                ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTAttt                                              >  2:1278974/1‑140 (MQ=255)

                                                                                ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTAttt                                              >  2:169757/1‑140 (MQ=255)

                                                                                ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTAttt                                              >  2:365540/1‑140 (MQ=255)

                                                                                ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTAAAAAACAAACCGAAGGTtttttt                                              >  2:1090678/1‑140 (MQ=255)

                                                                                 cAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTAtttt                                             <  1:705955/140‑1 (MQ=255)

                                                                                   gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCa                                           <  2:959340/140‑1 (MQ=255)

                                                                                    aTGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCaa                                          <  2:961072/140‑1 (MQ=255)

                                                                                    aTGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCaa                                          <  2:767448/140‑1 (MQ=255)

                                                                                    aTGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCaa                                          <  2:923082/140‑1 (MQ=255)

                                                                                      gACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACa                                        <  2:1209940/140‑1 (MQ=255)

                                                                                         aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACatta                                     >  2:201587/1‑140 (MQ=255)

                                                                                             aTGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTaa                                 <  1:979074/140‑1 (MQ=255)

                                                                                                 tctcATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCGTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCAt                             <  2:890891/140‑1 (MQ=255)

                                                                                                 tctcATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCAt                             <  1:1025889/140‑1 (MQ=255)

                                                                                                 tctcATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCAt                             <  1:496049/140‑1 (MQ=255)

                                                                                                     atatCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAAt                         >  2:749367/1‑140 (MQ=255)

                                                                                                      tatCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATg                        >  1:268244/1‑140 (MQ=255)

                                                                                                       atCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGa                       <  2:912985/140‑1 (MQ=255)

                                                                                                          aGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACaa                    >  1:1043379/1‑140 (MQ=255)

                                                                                                           gggACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAAc                   >  1:264573/1‑140 (MQ=255)

                                                                                                            ggACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAAcc                  >  1:17985/1‑140 (MQ=255)

                                                                                                            ggACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAAcc                  >  1:1090446/1‑140 (MQ=255)

                                                                                                            ggACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAAcc                  >  1:325856/1‑140 (MQ=255)

                                                                                                            ggACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAAcc                  >  1:407192/1‑140 (MQ=255)

                                                                                                               cTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCttt               >  2:900086/1‑140 (MQ=255)

                                                                                                                 tGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTa             >  1:1025751/1‑140 (MQ=255)

                                                                                                                     cGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAg         <  1:1278974/140‑1 (MQ=255)

                                                                                                                       cACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCa       <  2:180559/140‑1 (MQ=255)

                                                                                                                        aCCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCaa      <  1:858371/140‑1 (MQ=255)

                                                                                                                           ttccttAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAg   <  1:201587/140‑1 (MQ=255)

                                                                                                                            tccttAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGc  >  1:94534/1‑140 (MQ=255)

                                                                                                                            tccttAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGc  <  2:51268/140‑1 (MQ=255)

CTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGC  >  NC_000913/3653104‑3653367

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.