BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3653230	NA (NA)	111 (1.080)	63/278	0.2	91.7%	noncoding (1/1195 nt)	IS5	repeat region
*	?	NC_000913	= 3766089	10 (0.100)	111 (1.080)	63/278	0.2	91.7%	coding (3907/4134 nt)	rhsA	rhs element protein RhsA

Only 100 of 134 total aligned reads displayed.

CTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGCG  >  NC_000913/3653099‑3653368

ctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGa                                                                                                                                     >  1:967212/1‑140 (MQ=31)

ctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGa                                                                                                                                     >  2:1221575/1‑140 (MQ=31)

   ttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGacac                                                                                                                                  <  1:1242034/140‑1 (MQ=33)

   ttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGacac                                                                                                                                  <  2:1020313/140‑1 (MQ=33)

        gTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑ttt                                                                                                                            >  2:620515/1‑140 (MQ=37)

            gACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑ttttttt                                                                                                                        <  2:140298/140‑1 (MQ=255)

             aCGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTa                                                                                                                       >  2:838437/1‑140 (MQ=255)

             aCGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTa                                                                                                                       >  2:441041/1‑140 (MQ=255)

              cGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTAc                                                                                                                      <  1:277765/140‑1 (MQ=255)

               ggCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACa                                                                                                                     <  1:1667805/140‑1 (MQ=255)

               ggCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACa                                                                                                                     <  1:784935/140‑1 (MQ=255)

               ggCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACa                                                                                                                     <  1:1235776/140‑1 (MQ=255)

               ggCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACa                                                                                                                     <  1:1106709/140‑1 (MQ=255)

               ggCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACATGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACa                                                                                                                     <  1:967671/140‑1 (MQ=255)

                 cgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATa                                                                                                                   <  1:413246/140‑1 (MQ=255)

                 cgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATa                                                                                                                   <  2:1655405/140‑1 (MQ=255)

                 cgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATa                                                                                                                   <  2:742450/140‑1 (MQ=255)

                              aTTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTAc                                                                                                      >  2:1261034/1‑140 (MQ=255)

                              aTTCACTGTCGGCGAAGGTAAGTTGATGACTCACGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTAc                                                                                                      >  1:921467/1‑140 (MQ=255)

                               ttCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGATCACCCTAcc                                                                                                     >  2:1410908/1‑140 (MQ=255)

                                tCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTAccc                                                                                                    <  2:1589871/140‑1 (MQ=255)

                                  aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTAccccc                                                                                                  <  2:116146/140‑1 (MQ=255)

                                  aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTAccccc                                                                                                  <  2:19219/140‑1 (MQ=255)

                                  aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTAccccc                                                                                                  >  1:16255/1‑140 (MQ=255)

                                  aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTAccccc                                                                                                  >  1:1405444/1‑140 (MQ=255)

                                  aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTAccccc                                                                                                  <  1:1307247/140‑1 (MQ=255)

                                    tGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCaa                                                                                                <  1:1310301/140‑1 (MQ=255)

                                     gTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCaaa                                                                                               <  2:779288/140‑1 (MQ=255)

                                     gTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCaaa                                                                                               <  1:857212/140‑1 (MQ=255)

                                     gTCGGCGAAGGTAAGTTGATGACTCATGATGAACACTGTTCTATGGCTCCAGATGACAAACATGGTCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCaaa                                                                                               <  2:1714957/140‑1 (MQ=255)

                                      tCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAAt                                                                                              >  2:732196/1‑140 (MQ=255)

                                       cGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAAtt                                                                                             >  1:184857/1‑140 (MQ=255)

                                       cGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAAtt                                                                                             >  2:1199233/1‑140 (MQ=255)

                                       cGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGCTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAAtt                                                                                             >  2:336629/1‑140 (MQ=255)

                                        ggCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATta                                                                                            >  1:820925/1‑140 (MQ=255)

                                         gCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATtat                                                                                           >  1:1296372/1‑140 (MQ=255)

                                         gCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATtat                                                                                           >  1:63813/1‑140 (MQ=255)

                                          cGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATtata                                                                                          <  2:201257/140‑1 (MQ=255)

                                            aaGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATtatata                                                                                        >  2:225208/1‑140 (MQ=255)

                                             aGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATaa                                                                                       <  1:1040631/140‑1 (MQ=255)

                                               gTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAg                                                                                     <  1:732196/140‑1 (MQ=255)

                                               gTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAg                                                                                     <  1:1573118/140‑1 (MQ=255)

                                                     tgatgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGAc                                                                               <  2:1258353/140‑1 (MQ=255)

                                                       atgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACa                                                                              >  1:803386/1‑140 (MQ=255)

                                                         gaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAata                                                                           >  2:1445695/1‑140 (MQ=255)

                                                          aCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAatat                                                                          <  1:838437/140‑1 (MQ=255)

                                                                    aaCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGacaaac                                                                >  2:278567/1‑140 (MQ=255)

                                                                      cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGacaaacaa                                                              >  2:598250/1‑140 (MQ=255)

                                                                      cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGacaaacaa                                                              >  2:422877/1‑140 (MQ=255)

                                                                        cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAAt                                                            <  1:1502697/140‑1 (MQ=255)

                                                                        cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAAt                                                            >  1:1445547/1‑140 (MQ=255)

                                                                         tGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACGAATc                                                           >  1:514794/1‑140 (MQ=255)

                                                                         tGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATc                                                           >  1:779879/1‑140 (MQ=255)

                                                                          gTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCg                                                          <  2:420004/140‑1 (MQ=255)

                                                                          gTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTCACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCg                                                          >  1:1612308/1‑140 (MQ=255)

                                                                            tCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGaa                                                        <  1:1542975/140‑1 (MQ=255)

                                                                              tATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAgg                                                      >  2:181096/1‑140 (MQ=255)

                                                                               aTGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGt                                                     <  2:816082/140‑1 (MQ=255)

                                                                                tGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGtt                                                    >  2:730594/1‑140 (MQ=255)

                                                                                tGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGtt                                                    >  2:524910/1‑140 (MQ=255)

                                                                                tGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGtt                                                    >  2:1615051/1‑140 (MQ=255)

                                                                                     ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTAttt                                               >  2:1032495/1‑140 (MQ=255)

                                                                                     ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTAttt                                               >  1:869401/1‑140 (MQ=255)

                                                                                     ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTAttt                                               >  1:1139529/1‑140 (MQ=255)

                                                                                      cAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTAtttt                                              <  2:72249/140‑1 (MQ=255)

                                                                                        gATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCa                                            <  2:176921/140‑1 (MQ=255)

                                                                                         aTGACAAACATGATCTCATATCAGGGACTTGTTCGCACCCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCa                                            <  2:803386/140‑1 (MQ=255)

                                                                                         aTGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCaa                                           <  1:1347226/140‑1 (MQ=255)

                                                                                         aTGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCaa                                           <  2:671731/140‑1 (MQ=255)

                                                                                         aTGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCaa                                           <  1:1042036/140‑1 (MQ=255)

                                                                                         aTGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCaa                                           <  1:1072613/140‑1 (MQ=255)

                                                                                         aTGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCaa                                           <  1:748714/140‑1 (MQ=255)

                                                                                                aCATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACattatt                                    <  2:329923/140‑1 (MQ=255)

                                                                                                   tGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGGGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAAc                                 >  2:1496754/1‑140 (MQ=255)

                                                                                                     aTCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCa                               >  1:101795/1‑140 (MQ=255)

                                                                                                     aTCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCa                               <  1:241801/140‑1 (MQ=255)

                                                                                                      tctcATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCAt                              <  2:1350194/140‑1 (MQ=255)

                                                                                                      tctcATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCAt                              <  2:382748/140‑1 (MQ=255)

                                                                                                       ctcATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTATTTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCAt                              <  1:1499982/140‑1 (MQ=255)

                                                                                                       ctcATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGTACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCAtt                             <  2:1296372/140‑1 (MQ=255)

                                                                                                       ctcATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCAtt                             <  1:278567/140‑1 (MQ=255)

                                                                                                       ctcATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCAtt                             >  1:661404/1‑140 (MQ=255)

                                                                                                          atatCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAAt                          >  2:1389737/1‑140 (MQ=255)

                                                                                                           tatCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATg                         >  1:1721283/1‑140 (MQ=255)

                                                                                                           tatCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATg                         >  2:253400/1‑140 (MQ=255)

                                                                                                            atCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGa                        >  1:911962/1‑140 (MQ=255)

                                                                                                             tCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGAc                       <  2:650313/140‑1 (MQ=255)

                                                                                                              cAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACa                      >  2:93366/1‑140 (MQ=255)

                                                                                                               aGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCAt                              <  1:15469/131‑1 (MQ=255)

                                                                                                               aGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACaa                     <  1:1385510/140‑1 (MQ=255)

                                                                                                                gggACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAAc                    >  2:252122/1‑140 (MQ=255)

                                                                                                                 ggACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACTCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAAcc                   >  1:543676/1‑140 (MQ=255)

                                                                                                                 ggACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAAcc                   <  2:1348832/140‑1 (MQ=255)

                                                                                                                    cTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCttt                >  1:197142/1‑140 (MQ=255)

                                                                                                                       gTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTAc             >  1:615857/1‑140 (MQ=255)

                                                                                                                             a‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCaa       <  2:1405444/140‑1 (MQ=255)

                                                                                                                                cttccttAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCaaaa     >  1:719677/1‑140 (MQ=255)

                                                                                                                                cttccttAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCaaaa     >  1:1007392/1‑140 (MQ=255)

                                                                                                                                  tccttAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGc   >  2:1365845/1‑140 (MQ=255)

                                                                                                                                   ccttAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGCg  >  2:1061326/1‑140 (MQ=255)

CTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCA‑CCTTCCTTAGGTGACACTA‑TTTTTTTACATAAAGAACACCCTACCCCCAAATTATATAAAGATGGACAATATCTTGACAAACAAATCGAAGGTTTATTTTCAACATTATTAACCATTAATGACAACCTTTTACGAGCAAAAGCG  >  NC_000913/3653099‑3653368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.