Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	888,014	0	T	G	28.7%	156.7 / 29.6	87	noncoding (44/81 nt)	rybB	small regulatory RNA RybB
Reads supporting (aligned to +/- strand):  ref base T (14/48);  new base G (25/0);  total (39/48)
Fisher's exact test for biased strand distribution p-value = 3.49e-12
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

GGGATGACGCTGCATTTTGTCACCGACCGTAAGCCGCTATCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGCAACTTCAGTTTTATCCTAATCCTGGCCATA  >  NC_000913/887876‑888153                                                                                                                                           |                                                                                                                                             gggATGACGCTGCATTTTGTCACCGACCGTAAGCCGCTATCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGtt                                                                                                                                             >  2:1126946/1‑140 (MQ=255)  ggATGACGCTGCATTTTGTCACCGACCGTAAGCCGCTATCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTg                                                                                                                                            <  1:1464322/140‑1 (MQ=255)  ggATGACGCTGCATTTTGTCACCGACCGTAAGCCGCTATCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTg                                                                                                                                            <  2:646887/140‑1 (MQ=255)  ggATGACGCTGCATTTTGTCACCGACCGTAAGCCGCTATCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTg                                                                                                                                            <  2:12299/140‑1 (MQ=255)       aCGCTGCATTTTGTCACCGACCGTAAGCCGCTATCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATggg                                                                                                                                       <  2:1503766/140‑1 (MQ=255)        cGCTGCATTTTGTCACCGACCGTAAGCCGCTATCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGc                                                                                                                                      <  1:943355/140‑1 (MQ=255)             cATTTTGTCACCGACCGTAAGCCGCTATCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCcac                                                                                                                                 >  1:1253490/1‑140 (MQ=255)                     cACCGACCGTAAGCCGCTATCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATggg                                                                                                                        <  2:1417446/140‑1 (MQ=255)                     cACCGACCGTAAGCCGCTATCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATggg                                                                                                                        <  1:1126946/140‑1 (MQ=255)                     cACCGACCGTAAGCCGCTATCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATggg                                                                                                                        <  1:31283/140‑1 (MQ=255)                       ccgaccgTAAGCCGCTATCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATagggg                                                                                                                      >  1:25521/1‑139 (MQ=255)                       ccgaccgTAAGCCGCTATCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGa                                                                                                                      <  2:1253490/140‑1 (MQ=255)                       ccgaccgTAAGCCGCTATCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGGTCCAC‑AAAAAggggg                                                                                                                      >  2:985531/1‑139 (MQ=255)                       ccgaccgTAAGCCGCTATCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCACAAAAATgggg                                                                                                                       >  2:763489/1‑140 (MQ=255)                       ccgaccgTAAGCCGCTATCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCAC‑AAAATggggg                                                                                                                      >  1:1103248/1‑139 (MQ=255)                       ccgaccgTAAGCCGCTATCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCAC‑AAAATGGGGa                                                                                                                      >  1:288853/1‑140 (MQ=255)                          accgTAAGCCGCTATCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACAt                                                                                                                   <  1:453828/140‑1 (MQ=255)                          accgTAAGCCGCTATCGCGCGAGGAGATTTTGAGAATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACAt                                                                                                                   <  1:875094/140‑1 (MQ=255)                             gTAAGCCGCTATCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCaa                                                                                                                <  2:971411/140‑1 (MQ=255)                                     cTATCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCAC‑AAAAAGGGGACATCAAAGaaaaaa                                                                                                        >  2:760468/1‑138 (MQ=255)                                      tATCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCa                                                                                                       >  1:661838/1‑140 (MQ=255)                                      tATCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCa                                                                                                       >  1:336562/1‑140 (MQ=255)                                        tCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGt                                                                                                     <  1:1422783/140‑1 (MQ=255)                                        tCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCCC‑AAAATGGGGACATCAAAGAAAAACAgg                                                                                                     >  2:750352/1‑139 (MQ=255)                                            gcgAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCa                                                                                                 <  2:505411/140‑1 (MQ=255)                                            gcgAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCa                                                                                                 <  1:1041902/140‑1 (MQ=255)                                            gcgAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCa                                                                                                 <  2:727640/140‑1 (MQ=255)                                            gcgAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCa                                                                                                 <  1:923989/140‑1 (MQ=255)                                            gcgAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCa                                                                                                 <  2:1064547/140‑1 (MQ=255)                                            gcgAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCa                                                                                                 <  2:1144675/140‑1 (MQ=255)                                            gcgAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCa                                                                                                 <  2:1160189/140‑1 (MQ=255)                                            gcgAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCa                                                                                                 <  2:1464365/140‑1 (MQ=255)                                            gcgAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCa                                                                                                 <  2:805301/140‑1 (MQ=255)                                            gcgAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCa                                                                                                 <  1:350535/140‑1 (MQ=255)                                            gcgAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCa                                                                                                 <  1:238683/140‑1 (MQ=255)                                               aggagATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCAC‑AAAATGGGGGCATCAAAGAAAAGCAGTGGGACTa                                                                                              >  1:259127/1‑140 (MQ=255)                                                  agaTTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAAtt                                                                                           <  2:1390663/140‑1 (MQ=255)                                                    aTTTTGTGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTaa                                                                                         <  1:445223/140‑1 (MQ=255)                                                    aTTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTaa                                                                                         <  1:426880/140‑1 (MQ=255)                                                    aTTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTaa                                                                                         <  2:1205480/140‑1 (MQ=255)                                                    aTTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTaa                                                                                         <  1:1329638/140‑1 (MQ=255)                                                    aTTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTaa                                                                                         <  2:785644/140‑1 (MQ=255)                                                    aTTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGAGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTaa                                                                                         <  2:63539/140‑1 (MQ=255)                                                        tGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCAC‑AAAAAGGGGGCATCAAAGAAAAACAGTGGCACTAATTAAGACt                                                                                     >  2:33336/1‑140 (MQ=255)                                                          aGGATGGTTGGGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGa                                                                                   >  1:1136292/1‑140 (MQ=255)                                                            gATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATg                                                                                 <  1:1175632/140‑1 (MQ=255)                                                            gATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCAC‑AAAAAGGGGACATCAAAGAAAAACAGGGGGACTAATTAAAACTGATg                                                                                 >  2:254589/1‑140 (MQ=255)                                                                      agGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGaa                                                                       <  2:38708/140‑1 (MQ=255)                                                                          ttGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAAAGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGt                                                                   >  1:1148352/1‑140 (MQ=255)                                                                          ttGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGGAGGGCTCCAC‑AAAAAAGGGACATCAAAAAAAAAAAGCGGCACCAATTAAGACTGATGCCCTGCGGgaaaat                                                                   >  2:957829/1‑138 (MQ=255)                                                                          ttGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAACAGGGGCACTAATTAAGAATGATGCCCTGCGGAAAAga                                                                   >  1:1567211/1‑139 (MQ=255)                                                                          ttGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCAC‑AAAAAGGGGACATCAAAGAAAAGCAGGGGCACTAATTAAGACTGATGCCCTGCGGAAAAga                                                                   >  2:443591/1‑139 (MQ=255)                                                                           tGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGtt                                                                  >  2:1544554/1‑140 (MQ=255)                                                                           tGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCAC‑AAAAAGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGtt                                                                  >  1:1396550/1‑140 (MQ=255)                                                                                          aaGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTTATGGGCTCCAC‑AAAATTGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAATTCTGCGGTTGTGCaaa                                                   >  1:997714/1‑140 (MQ=255)                                                                                          aaGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAACAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCaaa                                                   >  2:891587/1‑140 (MQ=255)                                                                                          aaGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAAAGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCaaa                                                   >  1:359018/1‑140 (MQ=255)                                                                                           aGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAACAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAATTCTGCGGTTGTGCaaaa                                                  >  1:1241477/1‑140 (MQ=255)                                                                                            gTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCaaaaa                                                 >  1:455409/1‑140 (MQ=255)                                                                                            gTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCaaaaa                                                 >  1:910002/1‑140 (MQ=255)                                                                                               ttAGATAACAAAAAACCCATCATCCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAACAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAAt                                              >  1:427037/1‑140 (MQ=255)                                                                                               ttAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAAt                                              >  1:1105310/1‑140 (MQ=255)                                                                                               ttAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAAt                                              >  1:554335/1‑140 (MQ=255)                                                                                               ttAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCAC‑AAAAAGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGTAAAAAAAt                                              >  1:679107/1‑140 (MQ=255)                                                                                                 aGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAAttt                                            >  1:1434895/1‑140 (MQ=255)                                                                                                  gATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTTATGGGCTCCAC‑CAAAAAAGGACATCAAAAAAAAACAGTTGCACCAATTAAAACCGAAGCCCCGCGGAAAAATTGTGCGGTGGTGCAAAAAAAATTc                                           >  2:855369/1‑140 (MQ=255)                                                                                                     aaCAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGGACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCAtt                                        >  1:802806/1‑140 (MQ=255)                                                                                                       cAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCAtttt                                      <  1:891587/140‑1 (MQ=255)                                                                                                          aaaaCCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAg                                   <  2:1136292/140‑1 (MQ=255)                                                                                                            aaCCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAggg                                 >  1:1057855/1‑140 (MQ=255)                                                                                                            aaCCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAggg                                 <  1:33336/140‑1 (MQ=255)                                                                                                             aCCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGc                                <  1:1076091/140‑1 (MQ=255)                                                                                                             aCCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGc                                <  1:995051/140‑1 (MQ=255)                                                                                                             aCCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGc                                <  1:836384/140‑1 (MQ=255)                                                                                                             aCCCATCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGc                                >  1:1317202/1‑140 (MQ=255)                                                                                                                 aTCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGCAACt                            >  1:1244938/1‑140 (MQ=255)                                                                                                                 aTCAACCTTGAACCGAAATGGCGGGGGTGATGGGCTCCAC‑AAAAAGGGGACATCAAAGAAAAACAGGGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTTCGGTTGTGCAAAAAAATTTCATTTTCAGGGCAACt                            >  2:824275/1‑140 (MQ=255)                                                                                                                  tCAACCTTGAACCGAAATGGCGGGGGTGATGGGGTCCAC‑AAAAAGGGGGCATCAAAGAAAAGCAGTGGCACTAATTAAGAATGATGCCCTGCGGAAAAGATCTGCGGTTGTGCAAAAAAATTTCATTTTTAGGGCAACtt                           >  2:1170961/1‑140 (MQ=255)                                                                                                                    aaCCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGCAACTTCa                         >  1:516735/1‑140 (MQ=255)                                                                                                                       cTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGCAACTTCAGtt                      <  1:440643/140‑1 (MQ=255)                                                                                                                       cTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGCAACTTCAGtt                      <  1:530202/140‑1 (MQ=255)                                                                                                                        ttGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGCAACTTCAGttt                     <  1:280750/140‑1 (MQ=255)                                                                                                                        ttGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGCAACTTCAGttt                     <  2:336562/140‑1 (MQ=255)                                                                                                                        ttGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGCAACTTCAGttt                     <  2:164729/140‑1 (MQ=255)                                                                                                                        ttGAACCGAAATGGCGGGGGTGATGGGCTCCAC‑AAAATGGGGACAGCAAAAAAAAGCAGGGGCACTAATTAAGACGGATGCCCTGCGGAAAAATTCTGGGGTTGTGCAAAAAAATTTCATTTTTAGGGCCACTTTAGttt                     >  2:919257/1‑140 (MQ=255)                                                                                                                           aaCCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGGAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGCAACTTCAGTTTTAt                  >  1:1094787/1‑140 (MQ=255)                                                                                                                            aCCGAAATGGCGGGGGTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGGACTAATTAAGACTGATGCCCTGCGGGAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGCAACTTCAGTTTTATc                 >  2:405344/1‑140 (MQ=255)                                                                                                                             ccGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGCAACTTCAGTTTTATcc                <  1:114354/140‑1 (MQ=255)                                                                                                                             ccGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGCAACTTCAGTTTTATcc                <  1:556157/140‑1 (MQ=255)                                                                                                                             ccGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGCAACTTCAGTTTTATcc                <  2:1524505/140‑1 (MQ=255)                                                                                                                                aaaTGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGCAACTTCAGTTTTATCCTaa             >  1:594315/1‑140 (MQ=255)                                                                                                                                  aTGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGCAACTTCAGTTTTATCCTAATc           <  1:603672/140‑1 (MQ=255)                                                                                                                                      cGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGCAACTTCAGTTTTATCCTAATCCTgg       <  2:661838/140‑1 (MQ=255)                                                                                                                                      cGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGCAACTTCAGTTTTATCCTAATCCTgg       <  2:142714/140‑1 (MQ=255)                                                                                                                                        gggTTTATGGGCCCCAC‑AAAAAAGGGGCATTTAAGAAAAGCAGAGGCACTAATTAAGACTGATGCCCCGCGGGAAAGATTTGCGGGTGTGCAAAAAAAATTCATTTTCAGGGCAACCTCAGTTTTATCCTAATCCTGGcc     >  2:537151/1‑140 (MQ=255)                                                                                                                                           ttGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGCAACTTCAGTTTTATCCTAATCCTGGCCATa  <  2:554335/140‑1 (MQ=255)                                                                                                                                           ttGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGCAACTTCAGTTTTATCCTAATCCTGGCCATa  <  2:1244938/140‑1 (MQ=255)                                                                                                                                           |                                                                                                                                             GGGATGACGCTGCATTTTGTCACCGACCGTAAGCCGCTATCGCGCGAGGAGATTTTGAGGATGGTTGAGAGGGTTGCAGGGTAGTAGATAAGTTTTAGATAACAAAAAACCCATCAACCTTGAACCGAAATGGCGGGGTTGATGGGCTCCAC‑AAAATGGGGACATCAAAGAAAAGCAGTGGCACTAATTAAGACTGATGCCCTGCGGAAAAGTTCTGCGGTTGTGCAAAAAAATTTCATTTTCAGGGCAACTTCAGTTTTATCCTAATCCTGGCCATA  >  NC_000913/887876‑888153

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑