BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3363001 =	92 (1.630)	94 (1.670)	53/276	0.0	67.3%	coding (195/2382 nt)	yhcD	putative fimbrial usher protein YhcD
*	?	NC_000913	3766087 =	0 (0.000)	94 (1.670)	53/276	0.0	67.3%	coding (3905/4134 nt)	rhsA	rhs element protein RhsA

Only 100 of 192 total aligned reads displayed.

GATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362870‑3363140

ttcctgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATgg                                                                                                                                      >  1:889704‑M1/132‑140 (MQ=255)

  tGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCg                                                                                                                                    >  2:926318/1‑140 (MQ=255)

  cctgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCg                                                                                                                                    <  1:795347‑M1/11‑1 (MQ=255)

          acgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGaaaaaaaa                                                                                                                            >  1:497440‑M1/122‑140 (MQ=255)

          acgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGaaaaaaaa                                                                                                                            >  1:571611‑M1/122‑140 (MQ=255)

          acgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGaaaaaaaa                                                                                                                            <  2:147546‑M1/19‑1 (MQ=255)

           gaTTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑g                                                                                                                          >  1:934760/1‑140 (MQ=255)

            gtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑gg                                                                                                                         >  1:845108‑M1/120‑140 (MQ=255)

            gtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑gg                                                                                                                         >  1:634618‑M1/120‑140 (MQ=255)

            gtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑gg                                                                                                                         >  2:3214‑M1/120‑140 (MQ=255)

            aTTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑gg                                                                                                                         <  1:647941/140‑1 (MQ=255)

               gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCaa                                                                                                                      >  2:476303/1‑140 (MQ=255)

               gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCaa                                                                                                                      >  1:451281/1‑140 (MQ=255)

               gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTCATAGTATCAGTAAATGGCGAAAAAAAA‑GGCaa                                                                                                                      >  1:507491/1‑140 (MQ=255)

                 cGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACa                                                                                                                    <  2:343741/140‑1 (MQ=255)

                             tGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCt                                                                                                        <  2:551346/140‑1 (MQ=255)

                                tCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTtg                                                                                                     >  1:771959/1‑140 (MQ=255)

                                    atcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTtgatga                                                                                                 <  1:518952‑M1/45‑1 (MQ=255)

                                        ctccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAAt                                                                                             <  2:172201‑M1/49‑1 (MQ=255)

                                         tccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATg                                                                                            <  1:10368‑M1/50‑1 (MQ=255)

                                           tAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGc                                                                                          <  2:451281/140‑1 (MQ=255)

                                              aatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGAc                                                                                       <  2:244367‑M1/55‑1 (MQ=255)

                                                tctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     >  1:867766‑M1/84‑140 (MQ=255)

                                                tctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaaactatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     <  1:838232‑M1/57‑1 (MQ=255)

                                                   gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTg                                                                                  <  2:174287‑M1/60‑1 (MQ=255)

                                                   gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTg                                                                                  <  2:523715‑M1/60‑1 (MQ=255)

                                                   gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAA‑‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGt                                                                                 <  2:589921‑M1/60‑1 (MQ=255)

                                                          attatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGAt                                                                           >  2:621984‑M1/74‑140 (MQ=255)

                                                                 tAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAt                                                                    >  2:695183/1‑140 (MQ=255)

                                                                 tAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAt                                                                    <  2:771959/140‑1 (MQ=255)

                                                                 tAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATAAGGCAt                                                                    <  2:315537/140‑1 (MQ=255)

                                                                  aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAtt                                                                   >  2:921966/1‑140 (MQ=255)

                                                                      acacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTg                                                               <  2:83298‑M1/79‑1 (MQ=255)

                                                                       atCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGc                                                              >  1:4676/1‑140 (MQ=255)

                                                                         cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCGGGCATTTCTGcaa                                                            >  2:653710/1‑140 (MQ=255)

                                                                         cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:812641/1‑140 (MQ=255)

                                                                         cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:219699/1‑140 (MQ=255)

                                                                         cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:131934/1‑140 (MQ=255)

                                                                         cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:432119/1‑140 (MQ=255)

                                                                         cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACACTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:672059/1‑140 (MQ=255)

                                                                         cGCATTATTTTTCCCGTTCAGCCCGGTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:439017/1‑140 (MQ=255)

                                                                          gCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaac                                                           >  2:784721/1‑140 (MQ=255)

                                                                                  atccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGt                                                   <  2:331555‑M1/91‑1 (MQ=255)

                                                                                     cctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGttt                                                 <  2:67752‑M1/94‑1 (MQ=255)

                                                                                     cctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTa                                                <  1:851509‑M1/94‑1 (MQ=255)

                                                                                      ctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaa                                               <  1:66567‑M1/95‑1 (MQ=255)

                                                                                        gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  1:734229‑M1/97‑1 (MQ=255)

                                                                                        gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  1:426776‑M1/97‑1 (MQ=255)

                                                                                        gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  2:218678‑M1/97‑1 (MQ=255)

                                                                                        gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTCCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  2:182912‑M1/97‑1 (MQ=255)

                                                                                          tCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           >  1:385772/1‑140 (MQ=255)

                                                                                          gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           <  2:899020‑M1/99‑1 (MQ=255)

                                                                                          gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           <  1:313163‑M1/99‑1 (MQ=255)

                                                                                           tctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAtt                                          <  1:528850‑M1/100‑1 (MQ=255)

                                                                                             tgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTcc                                        <  1:914553‑M1/102‑1 (MQ=255)

                                                                                             tgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTcc                                        <  1:258206‑M1/102‑1 (MQ=255)

                                                                                              gcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTTATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCt                                       <  2:282668‑M1/103‑1 (MQ=255)

                                                                                              gcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCt                                       <  1:5640‑M1/103‑1 (MQ=255)

                                                                                              gcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCt                                       <  2:740137‑M1/103‑1 (MQ=255)

                                                                                               caacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCtt                                      <  1:757438‑M1/104‑1 (MQ=255)

                                                                                                     ttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTgaag                                <  1:221767‑M1/110‑1 (MQ=255)

                                                                                                        gCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGaaa                             >  2:582786/1‑140 (MQ=255)

                                                                                                        cacgagaagctatcattgttatatctaAGCAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGaaa                             <  2:206468‑M1/113‑1 (MQ=255)

                                                                                                           aGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGaaaaaa                          >  1:75038/1‑140 (MQ=255)

                                                                                                            ggTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGaaaaaaa                         >  1:676039/1‑140 (MQ=255)

                                                                                                              tGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCGGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATg                       <  1:653710/140‑1 (MQ=255)

                                                                                                               agctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATgg                      >  2:56652‑M1/21‑140 (MQ=255)

                                                                                                               agctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATgg                      >  1:149580‑M1/21‑140 (MQ=255)

                                                                                                                   atcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  >  2:838232‑M1/17‑140 (MQ=255)

                                                                                                                   atTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  1:691644/140‑1 (MQ=255)

                                                                                                                   atTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  1:562868/140‑1 (MQ=255)

                                                                                                                     tCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTTCGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:427673/140‑1 (MQ=255)

                                                                                                                     tCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:75038/140‑1 (MQ=255)

                                                                                                                     tCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:315914/140‑1 (MQ=255)

                                                                                                                     tCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:476303/140‑1 (MQ=255)

                                                                                                                     tCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:229426/140‑1 (MQ=255)

                                                                                                                     tCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:385772/140‑1 (MQ=255)

                                                                                                                     cattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:322883‑M1/15‑140 (MQ=255)

                                                                                                                     cattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:795347‑M1/15‑140 (MQ=255)

                                                                                                                     cattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:718337‑M1/15‑140 (MQ=255)

                                                                                                                     cattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:174287‑M1/15‑140 (MQ=255)

                                                                                                                     cattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:258206‑M1/15‑140 (MQ=255)

                                                                                                                      attgttatatctaAGTAAATGGCGAAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:67752‑M1/14‑140 (MQ=255)

                                                                                                                       aCTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  2:867092/1‑140 (MQ=255)

                                                                                                                        tgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             <  1:290779‑M1/129‑1 (MQ=255)

                                                                                                                         tGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGAc            <  1:210043/140‑1 (MQ=255)

                                                                                                                         gttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCt                    <  2:502761‑M1/122‑1 (MQ=255)

                                                                                                                         gttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGAc            >  2:307558‑M1/11‑140 (MQ=255)

                                                                                                                         gttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGAc            >  2:10368‑M1/11‑140 (MQ=255)

                                                                                                                          gATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           <  2:812641/140‑1 (MQ=255)

                                                                                                                           tatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACta          >  1:83298‑M1/9‑140 (MQ=255)

                                                                                                                           aTAGTATCAGTAAATGGTGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACta          >  2:198310/1‑140 (MQ=255)

                                                                                                                               tATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      >  1:72146/1‑140 (MQ=255)

                                                                                                                                  aAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTg   <  2:61416‑M1/139‑1 (MQ=255)

                                                                                                                                  aAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTg   <  1:484474‑M1/139‑1 (MQ=255)

                                                                                                                                   AGTAAATGGCGAGAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  <  2:109466‑M1/140‑1 (MQ=255)

                                                                                                                                   AGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGTTGTTACGACTATATATTGt  >  2:4676‑M1/1‑140 (MQ=255)

                                                                                                                                   AGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      <  1:33269‑M1/136‑1 (MQ=255)

                                                                                                                                   AGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  <  2:882071‑M1/140‑1 (MQ=255)

                                                                                                                                   AGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAATTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  >  1:154103‑M1/1‑140 (MQ=255)

GATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362870‑3363140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.