mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,168,221 | 0 | T | C | 43.4% | 253.8 / inf | 245 | intergenic (+21/‑151) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | NC_000913 | 4,168,215 | 0 | A | T | 42.1% | 279.3 / inf | 241 | intergenic (+15/‑157) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | NC_000913 | 4,168,472 | 0 | G | A | 28.4% | 300.5 / 160.3 | 183 | intergenic (+25/‑169) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,475 | 0 | G | T | 27.1% | 316.0 / 168.7 | 177 | intergenic (+28/‑166) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,476 | 0 | A | G | 27.0% | 309.0 / 146.1 | 178 | intergenic (+29/‑165) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 1,466,210 | 0 | G | A | 23.7% | 193.8 / 44.5 | 93 | pseudogene (819/2518 nt) | ydbA | putative outer membrane protein, N‑terminal fragment |
| * | NC_000913 | 1,466,201 | 0 | T | C | 22.7% | 218.5 / 39.0 | 97 | pseudogene (810/2518 nt) | ydbA | putative outer membrane protein, N‑terminal fragment |
| * | BN000925 | 8,767 | 1 | . | C | 22.5% | 561.4 / 266.7 | 237 | coding (1366/3006 nt) | tnpA | Tn1 transposase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 21.9% | 265.0 / 75.2 | 123 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 807336 | 0 (0.000) | 61 (0.550) +G |
33/406 | 3.5 | 50.3% | intergenic (‑55/+97) | ybhC/ybhB | outer membrane lipoprotein YhbC/putative kinase inhibitor |
| ? | NC_000913 | = 4171849 | 121 (1.090) | intergenic (+93/‑208) | rrfB/murB | 5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase | |||||
| * | ? | NC_000913 | = 807336 | 0 (0.000) | 35 (0.320) +G |
21/406 | 6.0 | 36.4% | intergenic (‑55/+97) | ybhC/ybhB | outer membrane lipoprotein YhbC/putative kinase inhibitor |
| ? | NC_000913 | = 4040729 | 123 (1.110) | intergenic (+93/+177) | rrfA/mobB | 5S ribosomal RNA/molybdopterin‑guanine dinucleotide biosynthesis adaptor protein | |||||
| * | ? | BN000925 | = 52743 | 207 (1.170) | 3 (0.020) | 3/388 | 10.0 | 1.6% | coding (154/438 nt) | traM | TraM protein |
| ? | BN000925 | = 52809 | 176 (1.050) | coding (220/438 nt) | traM | TraM protein | |||||
| * | ? | NC_000913 | = 807336 | 0 (0.000) | 19 (0.170) +G |
9/406 | 10.4 | 27.8% | intergenic (‑55/+97) | ybhC/ybhB | outer membrane lipoprotein YhbC/putative kinase inhibitor |
| ? | NC_000913 | 3423330 = | 99 (0.890) | intergenic (+136/+93) | yhdZ/rrfF | putative ABC transporter ATP‑binding subunit YhdZ/5S ribosomal RNA | |||||
| * | ? | NC_000913 | 4542682 = | 136 (1.230) | 8 (0.080) | 7/390 | 11.1 | 6.4% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 104 (0.980) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 4542690 | 136 (1.230) | 5 (0.050) | 5/390 | 12.3 | 4.1% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 104 (0.980) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 1978203 | 2 (0.020) | 4 (0.040) | 3/408 | 14.2 | 66.7% | intergenic (‑6/+315) | flhD/insB‑5 | DNA‑binding transcriptional dual regulator FlhD/IS1 protein InsB |
| ? | NC_000913 | 1978503 = | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||