mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BN000925 | 31,939 | 0 | C | G | 65.6% | 195.2 / 218.4 | 163 | P88R (CCG→CGG) ‡ | upf31.7 | hypothetical protein |
| * | BN000925 | 31,940 | 0 | G | C | 65.2% | 185.5 / 223.0 | 164 | P88P (CCG→CCC) ‡ | upf31.7 | hypothetical protein |
| * | BN000925 | 31,941 | 0 | C | G | 65.2% | 182.7 / 223.8 | 164 | P89A (CCT→GCT) | upf31.7 | hypothetical protein |
| * | BN000925 | 8,770 | 0 | G | C | 57.2% | 67.3 / inf | 187 | A457P (GCA→CCA) ‡ | tnpA | Tn1 transposase |
| * | BN000925 | 8,771 | 0 | C | G | 57.2% | 72.4 / inf | 187 | A457G (GCA→GGA) ‡ | tnpA | Tn1 transposase |
| * | BN000925 | 8,772 | 0 | A | C | 57.2% | 413.9 / 310.5 | 187 | coding (1371/3006 nt) | tnpA | Tn1 transposase |
| * | BN000925 | 8,767 | 1 | . | C | 42.5% | 32.0 / inf | 187 | coding (1366/3006 nt) | tnpA | Tn1 transposase |
| * | BN000925 | 31,938 | 0 | C | . | 35.0% | 408.5 / 209.6 | 160 | coding (262/420 nt) | upf31.7 | hypothetical protein |
| * | BN000925 | 31,941 | 1 | . | G | 34.8% | 158.9 / 278.4 | 164 | coding (265/420 nt) | upf31.7 | hypothetical protein |
| * | NC_000913 | 4,168,221 | 0 | T | C | 32.6% | 165.0 / 95.2 | 98 | intergenic (+21/‑151) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | NC_000913 | 4,168,215 | 0 | A | T | 31.6% | 163.1 / 99.8 | 96 | intergenic (+15/‑157) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | NC_000913 | 4,168,472 | 0 | G | A | 29.1% | 79.8 / 43.5 | 55 | intergenic (+25/‑169) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,475 | 0 | G | T | 25.4% | 104.8 / 39.0 | 55 | intergenic (+28/‑166) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,476 | 0 | A | G | 25.0% | 100.3 / 35.2 | 56 | intergenic (+29/‑165) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,296,060 | 0 | C | T | 22.0% | 99.0 / 29.0 | 50 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3263142 | 30 (0.830) | 3 (0.090) | 3/402 | 4.1 | 8.9% | coding (519/1209 nt) | tdcD | propionate kinase |
| ? | NC_000913 | = 3263174 | 33 (0.970) | coding (487/1209 nt) | tdcD | propionate kinase | |||||
| * | ? | BN000925 | = 41133 | 186 (0.970) | 9 (0.050) | 8/410 | 13.0 | 5.2% | coding (1477/2241 nt) coding (2422/3186 nt) |
traC2 traC1 |
TraC DNA primase TraC DNA primase and ssDNA binding protein |
| ? | BN000925 | = 41175 | 146 (0.790) | coding (1435/2241 nt) coding (2380/3186 nt) |
traC2 traC1 |
TraC DNA primase TraC DNA primase and ssDNA binding protein |
|||||
| * | ? | BN000925 | = 6854 | 246 (1.290) | 6 (0.030) | 6/404 | 14.0 | 2.6% | noncoding (1363/4949 nt) | transposon:Tn1 | repeat region |
| ? | BN000925 | = 6901 | 211 (1.160) | noncoding (1410/4949 nt) | transposon:Tn1 | repeat region | |||||
| * | ? | BN000925 | 22207 = | 199 (1.040) | 6 (0.030) | 6/410 | 14.1 | 3.1% | coding (1663/2559 nt) | trbE | TrbE protein |
| ? | BN000925 | 22222 = | 186 (1.010) | coding (1678/2559 nt) | trbE | TrbE protein | |||||
| * | ? | BN000925 | 55554 = | 161 (0.840) | 4 (0.020) | 4/406 | 15.3 | 2.4% | coding (333/927 nt) | kfrA | KfrA coiled‑coil protein |
| ? | BN000925 | 55726 = | 177 (0.970) | coding (161/927 nt) | kfrA | KfrA coiled‑coil protein | |||||
| * | ? | BN000925 | 953 = | 207 (1.080) | 4 (0.020) | 4/408 | 15.4 | 1.9% | coding (550/1137 nt) | klaB | KlaB protein |
| ? | BN000925 | 973 = | 205 (1.120) | coding (530/1137 nt) | klaB | KlaB protein | |||||
| * | ? | BN000925 | = 32683 | 168 (0.880) | 3 (0.020) | 3/406 | 16.1 | 1.9% | coding (573/696 nt) | fiwA | FiwA |
| ? | BN000925 | = 32717 | 153 (0.840) | coding (607/696 nt) | fiwA | FiwA | |||||