mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BN000925 | 8,770 | 0 | G | C | 64.6% | 253.5 / inf | 226 | A457P (GCA→CCA) ‡ | tnpA | Tn1 transposase |
| * | BN000925 | 8,771 | 0 | C | G | 64.6% | 258.2 / inf | 226 | A457G (GCA→GGA) ‡ | tnpA | Tn1 transposase |
| * | BN000925 | 8,772 | 0 | A | C | 64.6% | 543.3 / inf | 226 | coding (1371/3006 nt) | tnpA | Tn1 transposase |
| * | BN000925 | 31,940 | 0 | G | C | 54.9% | 29.2 / inf | 193 | P88P (CCG→CCC) ‡ | upf31.7 | hypothetical protein |
| * | BN000925 | 31,941 | 0 | C | G | 54.9% | 43.3 / inf | 193 | P89A (CCT→GCT) | upf31.7 | hypothetical protein |
| * | BN000925 | 31,939 | 0 | C | G | 54.7% | 26.7 / inf | 193 | P88R (CCG→CGG) ‡ | upf31.7 | hypothetical protein |
| * | NC_000913 | 4,168,221 | 0 | T | C | 47.9% | 189.9 / inf | 244 | intergenic (+21/‑151) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | NC_000913 | 4,168,215 | 0 | A | T | 46.9% | 214.3 / inf | 239 | intergenic (+15/‑157) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | BN000925 | 31,938 | 0 | C | . | 45.3% | 398.7 / inf | 192 | coding (262/420 nt) | upf31.7 | hypothetical protein |
| * | BN000925 | 31,941 | 1 | . | G | 45.1% | inf / inf | 193 | coding (265/420 nt) | upf31.7 | hypothetical protein |
| * | BN000925 | 8,767 | 1 | . | C | 35.0% | 233.5 / inf | 226 | coding (1366/3006 nt) | tnpA | Tn1 transposase |
| * | NC_000913 | 4,168,472 | 0 | G | A | 28.8% | 212.2 / 114.5 | 132 | intergenic (+25/‑169) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,475 | 0 | G | T | 28.6% | 230.8 / 122.2 | 126 | intergenic (+28/‑166) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,476 | 0 | A | G | 28.6% | 213.7 / 104.1 | 126 | intergenic (+29/‑165) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,296,060 | 0 | C | T | 20.5% | 288.6 / 71.9 | 127 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 65 (0.730) | 8 (0.090) | 8/408 | 6.6 | 10.0% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 82 (0.960) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 381292 = | NA (NA) | 8 (0.090) | 7/408 | 7.0 | NA | noncoding (33/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381312 = | NA (NA) | noncoding (53/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 2692558 = | 93 (1.050) | 4 (0.050) | 4/412 | 8.5 | 4.1% | coding (2986/3888 nt) | purL | phosphoribosylformylglycinamide synthetase |
| ? | NC_000913 | 2692677 = | 97 (1.130) | coding (2867/3888 nt) | purL | phosphoribosylformylglycinamide synthetase | |||||
| * | ? | BN000925 | 45612 = | 223 (0.980) | 5 (0.020) | 5/412 | 17.5 | 2.2% | coding (432/2214 nt) | traE | TraE putative helicase |
| ? | BN000925 | 45669 = | 226 (1.030) | coding (375/2214 nt) | traE | TraE putative helicase | |||||
| * | ? | BN000925 | = 42523 | 198 (0.870) | 4 (0.020) | 4/416 | 18.3 | 1.8% | coding (87/2241 nt) coding (1032/3186 nt) |
traC2 traC1 |
TraC DNA primase TraC DNA primase and ssDNA binding protein |
| ? | BN000925 | = 42707 | 246 (1.110) | coding (848/3186 nt) | traC1 | TraC DNA primase and ssDNA binding protein | |||||
| * | ? | BN000925 | = 32187 | 264 (1.160) | 3 (0.010) | 3/408 | 18.9 | 1.2% | coding (77/696 nt) | fiwA | FiwA |
| ? | BN000925 | = 32189 | 251 (1.150) | coding (79/696 nt) | fiwA | FiwA | |||||