mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BN000925 | 8,772 | 0 | A | C | 62.2% | 622.0 / inf | 276 | coding (1371/3006 nt) | tnpA | Tn1 transposase |
| * | BN000925 | 8,770 | 0 | G | C | 62.0% | 235.1 / inf | 276 | A457P (GCA→CCA) ‡ | tnpA | Tn1 transposase |
| * | BN000925 | 8,771 | 0 | C | G | 62.0% | 239.4 / inf | 276 | A457G (GCA→GGA) ‡ | tnpA | Tn1 transposase |
| * | BN000925 | 31,939 | 0 | C | G | 61.2% | 187.6 / inf | 224 | P88R (CCG→CGG) ‡ | upf31.7 | hypothetical protein |
| * | BN000925 | 31,940 | 0 | G | C | 60.9% | 183.4 / inf | 225 | P88P (CCG→CCC) ‡ | upf31.7 | hypothetical protein |
| * | BN000925 | 31,941 | 0 | C | G | 60.9% | 186.1 / inf | 225 | P89A (CCT→GCT) | upf31.7 | hypothetical protein |
| * | NC_000913 | 4,168,221 | 0 | T | C | 45.3% | 290.7 / inf | 290 | intergenic (+21/‑151) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | NC_000913 | 4,168,215 | 0 | A | T | 44.8% | 302.2 / inf | 288 | intergenic (+15/‑157) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | BN000925 | 31,941 | 1 | . | G | 39.1% | 153.9 / inf | 225 | coding (265/420 nt) | upf31.7 | hypothetical protein |
| * | BN000925 | 31,938 | 0 | C | . | 38.8% | 508.0 / inf | 224 | coding (262/420 nt) | upf31.7 | hypothetical protein |
| * | BN000925 | 8,767 | 1 | . | C | 38.0% | 209.3 / inf | 276 | coding (1366/3006 nt) | tnpA | Tn1 transposase |
| * | NC_000913 | 4,168,472 | 0 | G | A | 21.4% | 437.4 / 134.8 | 210 | intergenic (+25/‑169) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,475 | 0 | G | T | 20.9% | 508.6 / 136.8 | 201 | intergenic (+28/‑166) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,476 | 0 | A | G | 20.9% | 462.8 / 115.8 | 201 | intergenic (+29/‑165) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| Marginal new junction evidence (lowest skew 10 of 25 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 807336 | 0 (0.000) | 80 (0.530) +G |
41/420 | 3.3 | 54.2% | intergenic (‑55/+97) | ybhC/ybhB | outer membrane lipoprotein YhbC/putative kinase inhibitor |
| ? | NC_000913 | = 4171849 | 136 (0.900) | intergenic (+93/‑208) | rrfB/murB | 5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase | |||||
| * | ? | NC_000913 | = 807336 | 0 (0.000) | 42 (0.280) +G |
27/420 | 5.5 | 40.1% | intergenic (‑55/+97) | ybhC/ybhB | outer membrane lipoprotein YhbC/putative kinase inhibitor |
| ? | NC_000913 | = 4040729 | 126 (0.830) | intergenic (+93/+177) | rrfA/mobB | 5S ribosomal RNA/molybdopterin‑guanine dinucleotide biosynthesis adaptor protein | |||||
| * | ? | NC_000913 | 381292 = | NA (NA) | 18 (0.120) | 13/404 | 9.1 | NA | noncoding (33/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381312 = | NA (NA) | noncoding (53/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1568904 = | 2902 (19.130) | 13 (0.090) | 11/400 | 9.8 | 0.49% | intergenic (‑81/+50) | yddW/gadC | putative lipoprotein YddW/L‑glutamate:4‑aminobutyrate antiporter |
| ? | NC_000913 | 1568931 = | 2555 (17.770) | intergenic (‑108/+23) | yddW/gadC | putative lipoprotein YddW/L‑glutamate:4‑aminobutyrate antiporter | |||||
| * | ? | NC_000913 | = 807336 | 0 (0.000) | 23 (0.150) +G |
11/420 | 10.2 | 27.8% | intergenic (‑55/+97) | ybhC/ybhB | outer membrane lipoprotein YhbC/putative kinase inhibitor |
| ? | NC_000913 | 3423330 = | 120 (0.790) | intergenic (+136/+93) | yhdZ/rrfF | putative ABC transporter ATP‑binding subunit YhdZ/5S ribosomal RNA | |||||
| * | ? | NC_000913 | = 4409634 | 144 (0.950) | 5 (0.050) +63 bp |
5/296 | 10.5 | 4.5% | coding (360/732 nt) | rlmB | 23S rRNA 2'‑O‑ribose G2251 methyltransferase |
| ? | NC_000913 | 4409698 = | 158 (1.040) | coding (424/732 nt) | rlmB | 23S rRNA 2'‑O‑ribose G2251 methyltransferase | |||||
| * | ? | NC_000913 | 2852106 = | 125 (0.820) | 8 (0.050) | 8/406 | 11.2 | 6.0% | coding (243/273 nt) | hypC | hydrogenase 3 maturation protein HypC |
| ? | NC_000913 | 2852166 = | 132 (0.900) | coding (31/1122 nt) | hypD | Fe‑(CN)2CO cofactor assembly scaffold protein HypD | |||||
| * | ? | NC_000913 | 3220520 = | 165 (1.090) | 6 (0.040) | 5/404 | 12.9 | 3.7% | coding (1027/1380 nt) | patA | putrescine aminotransferase |
| ? | NC_000913 | 3220730 = | 153 (1.050) | coding (1237/1380 nt) | patA | putrescine aminotransferase | |||||
| * | ? | NC_000913 | = 1987441 | 134 (0.880) | 5 (0.030) | 5/402 | 12.9 | 3.9% | intergenic (+13/+66) | ftnB/yecJ | putative ferritin‑like protein/DUF2766 domain‑containing protein YecJ |
| ? | NC_000913 | = 1987450 | 119 (0.820) | intergenic (+22/+57) | ftnB/yecJ | putative ferritin‑like protein/DUF2766 domain‑containing protein YecJ | |||||
| * | ? | NC_000913 | = 3620886 | NA (NA) | 4 (0.030) | 4/398 | 13.5 | NA | coding (1695/4236 nt) | rhsB | rhs element protein RhsB |
| ? | NC_000913 | = 3620874 | NA (NA) | coding (1683/4236 nt) | rhsB | rhs element protein RhsB | |||||