| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3617315 = | 123 (0.920) | 4 (0.030) | 4/404 | 10.4 | 3.4% | coding (301/765 nt) | nikD | Ni(2(+)) ABC transporter ATP binding subunit NikD |
| ? | NC_000913 | 3617414 = | 112 (0.870) | coding (400/765 nt) | nikD | Ni(2(+)) ABC transporter ATP binding subunit NikD | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCAGATCGAGGATGCGCGCCTGTGCTACCACGTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCTCGAACGGGTACAGCTTCAGCACGCGCGCGGCGTTTTCCAGCCCCACCGCTTCTATGGCAGCGGTAAGCGTAGCGTCATCGGCGGGTTTCCCTAACGCCAGGCAGGTTTCCCGCGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3617561‑3617315‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcgtgCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGG > NC_000913/3617414‑3617648 GCAGATCGAGGATGCGCGCCTGTGCTACCACGTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCTCGAACGGGTACAGCTTCAGCACGCGCGCGGCGTTTTCCAGCCCCACCGCTTCTATGGCAGCGGTAAGCGTAGCGTCATCGGCGGGTTTCCCTAACGCCAGGCAGGTTTCCC < 1:498292/240‑1 GATCGAGGATGCGCGCCTGTGCTACCACGTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCTCGAACGGGTACAGCTTCAGCACGCGCGCGGCGTTTTCCAGCCCCACCGCTTCTATGGCAGCGGTAAGCGTAGCGTCATCGGCGGGTTTCCCTAACGCCAGGCAGGTTTCCCGCG < 1:906637/240‑1 CGAGGATGCGCGCCTGTGCTACCACGTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCTCGAACGGGTACAGCTTCAGCACGCGCGCGGCGTTTTCCAGCCCCACCGCTTCTATGGCAGCGGTAAGCGTAGCGTCATCGGCGGGTTTCCCTAACGCCAGGCAGGTTTCCCGCGCG < 2:806594/239‑1 GGATGCGCGCCTGTGCTACCACGTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCTCGAACGGGTACAGCTTCAGCACGCGCGCGGCGTTTTCCAGCCCCACCGCTTCTATGGCAGCGGTAAGCGTAGCGTCATCGGCGGGTTTCCCTAACGCCAGGCAGGTTTCCCGCGCGTG < 2:1288397/238‑1 TCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCTCGAACGGGTACAGCTTCAGCACGCGCGCGGCGTTTTCCAGCCCCACCGCTTCTATGGCAGCGGTAAGCGTAGCGTCATCGGCGGGTTTCCCTAACGCCAGGCAGGTTTCCC > 2:360242/1‑208 TGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCTCGAACGGGTACAGCTTCAGCACGCGCGCGGCGTTTTCCAGCCCCACCGCTTCTATGGCAGCGGTAAGCGTAGCGTCATCGGCGGGTTTCCCTAACGCCAGGCAGGTTTCCC > 2:1341190/1‑170 AGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCTCGAACGGGTACAGCTTCAGCACGCGCGCGGCGTTTTCCAGCCCCACCGCTTCTATGGCAGCGGTAAGCGTAGCGTCATCGGCGGGTTTCCCTAACGCCAGGCAGGTTTCCC > 2:571843/1‑160 ATCATCATGCGCTGCAACATGCCGCCGCTCATCTCGAACGGGTACAGCTTCAGCACGCGCGCGGCGTTTTCCAGCCCCACCGCTTCTATGGCAGCGGTAAGCGTAGCGTCATCGGCGGGTTTCCCTAACGCCAGGCAGGTTTCCCGCGCG > 2:896046/1‑150 TCTATGGCAGCGGTAAGCGTAGCGTCATCGGCGGGTTTCCCTAACGCCA‑GCAGGTTTCCCG > 2:1485913/1‑61 GCGGTAAGCGTAGCGTCATCGGCGGGTTTCCCTAACGCCAGGCAGGTTTCCCGCGCG > 2:101432/1‑57 GCGGTAAGCGTAGCGTCATCGGCGGGTTTCCCTAACGCCAGGCAGGTTTCCCGCGCG < 1:101432/57‑1 AGCGTCATCGGCGGGGTTCCCTAACGCCAGGCAGGTTTCCCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGT > 2:1330785/1‑239 CGTCATCGGCGGGTTTCCCTAACGCCAGGCAGGTTTCCCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAG > 2:803518/1‑88 CGTCATCGGCGGGTTTCCCTAACGCCAGGCAGGTTTCCCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAG < 1:803519/88‑1 TCGGCGGGTTTCCCTAACGCCAGGCAGGTTTCCCGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATG > 2:428107/1‑240 CGCGCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGCCCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCAT > 2:136496/1‑166 GCGTGCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGG < 2:628608/240‑1 GCAGATCGAGGATGCGCGCCTGTGCTACCACGTCAAGGTCGGTGGTCGGTTCATCGGCGATGATAAACGGTGATTCACACAGCACCGCCATCGCAATCATCATGCGCTGCAACATGCCGCCGCTCATCTCGAACGGGTACAGCTTCAGCACGCGCGCGGCGTTTTCCAGCCCCACCGCTTCTATGGCAGCGGTAAGCGTAGCGTCATCGGCGGGTTTCCCTAACGCCAGGCAGGTTTCCCGCGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3617561‑3617315‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgcgtgCTGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCGTTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTATGCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGG > NC_000913/3617414‑3617648 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |