mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BN000925 | 8,770 | 0 | G | C | 61.3% | 355.4 / inf | 457 | A457P (GCA→CCA) ‡ | tnpA | Tn1 transposase |
| * | BN000925 | 8,772 | 0 | A | C | 61.3% | 1097.1 / inf | 457 | coding (1371/3006 nt) | tnpA | Tn1 transposase |
| * | BN000925 | 8,771 | 0 | C | G | 60.8% | 331.6 / inf | 457 | A457G (GCA→GGA) ‡ | tnpA | Tn1 transposase |
| * | BN000925 | 31,939 | 0 | C | G | 60.6% | 224.8 / inf | 330 | P88R (CCG→CGG) ‡ | upf31.7 | hypothetical protein |
| * | BN000925 | 31,941 | 0 | C | G | 60.6% | 235.7 / inf | 332 | P89A (CCT→GCT) | upf31.7 | hypothetical protein |
| * | BN000925 | 31,940 | 0 | G | C | 60.2% | 231.5 / inf | 332 | P88P (CCG→CCC) ‡ | upf31.7 | hypothetical protein |
| * | NC_000913 | 4,168,221 | 0 | T | C | 42.2% | 227.5 / 282.8 | 199 | intergenic (+21/‑151) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | NC_000913 | 4,168,215 | 0 | A | T | 41.4% | 245.2 / 295.7 | 198 | intergenic (+15/‑157) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | BN000925 | 31,938 | 0 | C | . | 39.3% | 787.4 / inf | 326 | coding (262/420 nt) | upf31.7 | hypothetical protein |
| * | BN000925 | 31,941 | 1 | . | G | 39.2% | 196.0 / inf | 332 | coding (265/420 nt) | upf31.7 | hypothetical protein |
| * | BN000925 | 8,767 | 1 | . | C | 38.7% | 293.7 / inf | 457 | coding (1366/3006 nt) | tnpA | Tn1 transposase |
| * | NC_000913 | 1,466,210 | 0 | G | A | 23.5% | 126.0 / 39.3 | 68 | pseudogene (819/2518 nt) | ydbA | putative outer membrane protein, N‑terminal fragment |
| * | NC_000913 | 1,466,201 | 0 | T | C | 20.6% | 142.1 / 32.6 | 68 | pseudogene (810/2518 nt) | ydbA | putative outer membrane protein, N‑terminal fragment |
| Marginal new junction evidence (lowest skew 10 of 31 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 381292 = | NA (NA) | 15 (0.180) | 11/412 | 5.0 | NA | noncoding (33/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381312 = | NA (NA) | noncoding (53/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 3529405 | 94 (1.060) | 6 (0.070) | 6/410 | 6.7 | 6.6% | coding (58/402 nt) | hslR | heat shock protein Hsp15 |
| ? | NC_000913 | = 3529461 | 80 (0.950) | coding (114/402 nt) | hslR | heat shock protein Hsp15 | |||||
| * | ? | NC_000913 | = 3636853 | 51 (0.580) | 5 (0.060) | 5/402 | 7.1 | 9.6% | coding (558/1203 nt) | yhiN | putative oxidoreductase YhiN |
| ? | NC_000913 | = 3636839 | 47 (0.570) | coding (572/1203 nt) | yhiN | putative oxidoreductase YhiN | |||||
| * | ? | NC_000913 | 1708408 = | 87 (0.980) | 4 (0.050) | 4/412 | 7.7 | 4.8% | coding (1490/2223 nt) | rsxC | SoxR [2Fe‑2S] reducing system protein RsxC |
| ? | NC_000913 | 1708618 = | 74 (0.870) | coding (1700/2223 nt) | rsxC | SoxR [2Fe‑2S] reducing system protein RsxC | |||||
| * | ? | NC_000913 | = 15390 | 94 (1.060) | 4 (0.050) | 4/406 | 7.7 | 4.3% | noncoding (4/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 16740 = | 90 (1.080) | intergenic (+183/+11) | insL‑1/hokC | IS186/IS421 transposase/protein HokC | |||||
| * | ? | NC_000913 | 3270593 = | 72 (0.820) | 3 (0.040) | 3/414 | 8.3 | 3.8% | intergenic (‑1/+32) | rnpB/garK | RNase P catalytic RNA component/glycerate 2‑kinase 1 |
| ? | NC_000913 | 3270621 = | 83 (0.980) | intergenic (‑29/+4) | rnpB/garK | RNase P catalytic RNA component/glycerate 2‑kinase 1 | |||||
| * | ? | NC_000913 | = 1155574 | 95 (1.080) | 3 (0.040) | 3/416 | 8.3 | 3.2% | coding (451/642 nt) | tmk | hypothetical protein |
| ? | NC_000913 | = 1155576 | 92 (1.080) | coding (453/642 nt) | tmk | hypothetical protein | |||||
| * | ? | NC_000913 | 864667 = | 99 (1.120) | 3 (0.040) | 3/414 | 8.3 | 3.0% | coding (463/750 nt) | moeB | molybdopterin‑synthase adenylyltransferase |
| ? | NC_000913 | 864703 = | 99 (1.160) | coding (427/750 nt) | moeB | molybdopterin‑synthase adenylyltransferase | |||||
| * | ? | NC_000913 | = 4162515 | 101 (1.140) | 3 (0.030) | 3/418 | 8.4 | 3.0% | coding (756/1101 nt) | trmA | tRNA m(5)U54 methyltransferase |
| ? | NC_000913 | = 4162526 | 98 (1.140) | coding (745/1101 nt) | trmA | tRNA m(5)U54 methyltransferase | |||||
| * | ? | NC_000913 | 1708408 = | 87 (0.980) | 3 (0.030) | 3/422 | 8.4 | 3.7% | coding (1490/2223 nt) | rsxC | SoxR [2Fe‑2S] reducing system protein RsxC |
| ? | NC_000913 | 1708714 = | 69 (0.800) | coding (1796/2223 nt) | rsxC | SoxR [2Fe‑2S] reducing system protein RsxC | |||||