mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | BN000925 | 8,770 | 0 | G | C | 60.9% | 318.2 / inf | 412 | A457P (GCA→CCA) ‡ | tnpA | Tn1 transposase |
| * | BN000925 | 8,771 | 0 | C | G | 60.9% | 331.2 / inf | 412 | A457G (GCA→GGA) ‡ | tnpA | Tn1 transposase |
| * | BN000925 | 8,772 | 0 | A | C | 60.8% | 975.5 / inf | 412 | coding (1371/3006 nt) | tnpA | Tn1 transposase |
| * | BN000925 | 31,939 | 0 | C | G | 58.3% | 152.4 / inf | 321 | P88R (CCG→CGG) ‡ | upf31.7 | hypothetical protein |
| * | BN000925 | 31,940 | 0 | G | C | 58.3% | 155.0 / inf | 321 | P88P (CCG→CCC) ‡ | upf31.7 | hypothetical protein |
| * | BN000925 | 31,941 | 0 | C | G | 58.3% | 168.6 / inf | 321 | P89A (CCT→GCT) | upf31.7 | hypothetical protein |
| * | BN000925 | 31,938 | 0 | C | . | 42.3% | 711.6 / inf | 317 | coding (262/420 nt) | upf31.7 | hypothetical protein |
| * | BN000925 | 31,941 | 1 | . | G | 41.4% | 113.2 / inf | 321 | coding (265/420 nt) | upf31.7 | hypothetical protein |
| * | BN000925 | 8,767 | 1 | . | C | 39.1% | 247.7 / inf | 412 | coding (1366/3006 nt) | tnpA | Tn1 transposase |
| * | NC_000913 | 1,466,201 | 0 | T | C | 24.1% | 200.4 / 41.7 | 87 | pseudogene (810/2518 nt) | ydbA | putative outer membrane protein, N‑terminal fragment |
| * | NC_000913 | 4,168,472 | 0 | G | A | 22.2% | 286.4 / 117.5 | 189 | intergenic (+25/‑169) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,475 | 0 | G | T | 21.4% | 303.4 / 126.2 | 183 | intergenic (+28/‑166) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,476 | 0 | A | G | 21.4% | 275.9 / 111.3 | 183 | intergenic (+29/‑165) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,296,060 | 0 | C | T | 21.4% | 286.7 / 78.4 | 131 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 1,466,210 | 0 | G | A | 20.2% | 186.5 / 33.2 | 79 | pseudogene (819/2518 nt) | ydbA | putative outer membrane protein, N‑terminal fragment |
| Marginal new junction evidence (lowest skew 10 of 31 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 381292 = | NA (NA) | 15 (0.150) | 12/410 | 5.9 | NA | noncoding (33/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381312 = | NA (NA) | noncoding (53/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1430276 = | 72 (0.700) | 9 (0.090) | 8/410 | 7.3 | 10.5% | coding (1228/3363 nt) | stfR | Rac prophage; putative membrane protein |
| ? | NC_000913 | 1430422 = | 85 (0.860) | coding (1374/3363 nt) | stfR | Rac prophage; putative membrane protein | |||||
| * | ? | NC_000913 | = 1962878 | 0 (0.000) | 9 (0.090) | 8/428 | 7.6 | 100% | coding (95/393 nt) | flhE | flagellar protein |
| ? | NC_000913 | 1978503 = | NA (NA) | noncoding (768/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 381689 | NA (NA) | 8 (0.080) | 6/410 | 8.2 | NA | noncoding (430/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381743 | NA (NA) | noncoding (484/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1258932 = | 107 (1.040) | 10 (0.100) | 6/428 | 8.4 | 8.5% | coding (142/279 nt) | ychH | stress‑induced protein |
| ? | NC_000913 | 2101749 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 986259 | 95 (0.920) | 6 (0.060) | 6/426 | 8.4 | 6.1% | coding (724/1089 nt) | ompF | outer membrane porin F |
| ? | NC_000913 | 986265 = | 91 (0.890) | coding (718/1089 nt) | ompF | outer membrane porin F | |||||
| * | ? | NC_000913 | 411312 = | 103 (1.000) | 6 (0.060) | 5/412 | 8.7 | 5.9% | coding (1170/1185 nt) | araJ | putative transport protein AraJ |
| ? | NC_000913 | 411345 = | 92 (0.930) | coding (1137/1185 nt) | araJ | putative transport protein AraJ | |||||
| * | ? | NC_000913 | = 275149 | NA (NA) | 14 (0.140) | 5/426 | 8.9 | 10.7% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1258935 | 117 (1.140) | coding (145/279 nt) | ychH | stress‑induced protein | |||||
| * | ? | NC_000913 | = 1082873 | 94 (0.910) | 5 (0.050) | 4/408 | 9.2 | 5.8% | coding (631/1128 nt) | efeO | ferrous iron transport system protein EfeO |
| ? | NC_000913 | = 1083021 | 73 (0.740) | coding (779/1128 nt) | efeO | ferrous iron transport system protein EfeO | |||||
| * | ? | NC_000913 | = 3225477 | 67 (0.650) | 4 (0.040) | 4/412 | 9.3 | 5.5% | coding (2845/3093 nt) | ebgA | evolved beta‑D‑galactosidase subunit alpha |
| ? | NC_000913 | = 3225559 | 72 (0.720) | coding (2927/3093 nt) | ebgA | evolved beta‑D‑galactosidase subunit alpha | |||||