mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,168,221 | 0 | T | C | 45.4% | 331.2 / inf | 338 | intergenic (+21/‑151) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | NC_000913 | 4,168,215 | 0 | A | T | 44.4% | 355.7 / inf | 331 | intergenic (+15/‑157) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | NC_000913 | 4,168,472 | 0 | G | A | 27.4% | 402.1 / 204.9 | 237 | intergenic (+25/‑169) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,476 | 0 | A | G | 26.0% | 432.6 / 184.2 | 231 | intergenic (+29/‑165) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,475 | 0 | G | T | 25.9% | 483.3 / 210.1 | 232 | intergenic (+28/‑166) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 3,608,713 | 0 | T | G | 20.4% | 294.6 / 18.2 | 104 | intergenic (+64/+38) | zntA/tusA | Zn(2(+))/Cd(2(+))/Pb(2(+)) exporting P‑type ATPase/sulfur transfer protein TusA |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 381292 = | NA (NA) | 19 (0.140) | 11/402 | 8.0 | NA | noncoding (33/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381312 = | NA (NA) | noncoding (53/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 4542682 = | 132 (0.920) | 9 (0.070) | 9/402 | 8.7 | 6.3% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 141 (1.030) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 3220520 = | 127 (0.880) | 8 (0.060) | 7/402 | 9.6 | 5.8% | coding (1027/1380 nt) | patA | putrescine aminotransferase |
| ? | NC_000913 | 3220730 = | 139 (1.010) | coding (1237/1380 nt) | patA | putrescine aminotransferase | |||||
| * | ? | NC_000913 | = 4542690 | 124 (0.860) | 5 (0.040) | 5/402 | 10.6 | 3.7% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 141 (1.030) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 3381847 | 117 (0.810) | 5 (0.040) | 5/402 | 10.6 | 4.1% | coding (1105/1368 nt) | degQ | periplasmic serine endoprotease |
| ? | NC_000913 | = 3381859 | 120 (0.870) | coding (1117/1368 nt) | degQ | periplasmic serine endoprotease | |||||
| * | ? | NC_000913 | = 3450705 | 180 (1.250) | 5 (0.040) | 4/392 | 11.0 | 2.9% | coding (660/822 nt) | rplB | 50S ribosomal subunit protein L2 |
| ? | NC_000913 | = 3450691 | 164 (1.220) | coding (674/822 nt) | rplB | 50S ribosomal subunit protein L2 | |||||
| * | ? | NC_000913 | 2209938 = | 123 (0.860) | 3 (0.020) | 3/402 | 11.8 | 2.6% | coding (839/1845 nt) | yehQ | SWIM zinc finger domains‑containing protein YehQ |
| ? | NC_000913 | 2210287 = | 106 (0.770) | coding (1188/1845 nt) | yehQ | SWIM zinc finger domains‑containing protein YehQ | |||||
| * | ? | NC_000913 | = 3782597 | 182 (1.270) | 3 (0.020) | 3/404 | 11.9 | 1.7% | intergenic (‑35/+45) | cysE/gpsA | serine acetyltransferase/glycerol‑3‑phosphate dehydrogenase |
| ? | NC_000913 | = 3782604 | 177 (1.280) | intergenic (‑42/+38) | cysE/gpsA | serine acetyltransferase/glycerol‑3‑phosphate dehydrogenase | |||||