mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,168,221 | 0 | T | C | 45.5% | 294.2 / inf | 301 | intergenic (+21/‑151) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | NC_000913 | 4,168,215 | 0 | A | T | 43.4% | 328.9 / inf | 295 | intergenic (+15/‑157) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | NC_000913 | 4,168,472 | 0 | G | A | 32.3% | 311.7 / 217.2 | 217 | intergenic (+25/‑169) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,476 | 0 | A | G | 29.4% | 333.3 / 190.5 | 205 | intergenic (+29/‑165) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,475 | 0 | G | T | 28.8% | 385.7 / 205.8 | 205 | intergenic (+28/‑166) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| Marginal new junction evidence (lowest skew 10 of 21 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 381292 = | NA (NA) | 22 (0.190) | 15/412 | 5.9 | NA | noncoding (33/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381312 = | NA (NA) | noncoding (53/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 326558 | 143 (1.170) | 3 (0.040) +83 bp |
3/264 | 8.3 | 3.4% | coding (690/1671 nt) | betA | choline dehydrogenase |
| ? | NC_000913 | 326642 = | 136 (1.120) | coding (606/1671 nt) | betA | choline dehydrogenase | |||||
| * | ? | NC_000913 | = 2713829 | 123 (1.010) | 3 (0.040) +79 bp |
3/272 | 8.4 | 4.1% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase SrmB |
| ? | NC_000913 | 2713909 = | 101 (0.830) | coding (1014/1335 nt) | srmB | ATP‑dependent RNA helicase SrmB | |||||
| * | ? | NC_000913 | 1430276 = | 78 (0.640) | 6 (0.050) | 5/412 | 9.6 | 6.6% | coding (1228/3363 nt) | stfR | Rac prophage; putative membrane protein |
| ? | NC_000913 | 1430422 = | 96 (0.820) | coding (1374/3363 nt) | stfR | Rac prophage; putative membrane protein | |||||
| * | ? | NC_000913 | = 1604992 | 137 (1.120) | 5 (0.040) | 5/416 | 9.7 | 3.6% | coding (946/993 nt) | lsrD | Autoinducer‑2 ABC transporter membrane subunit LsrD |
| ? | NC_000913 | = 1605005 | 135 (1.150) | coding (959/993 nt) | lsrD | Autoinducer‑2 ABC transporter membrane subunit LsrD | |||||
| * | ? | NC_000913 | = 4199296 | 98 (0.800) | 4 (0.030) | 4/410 | 10.1 | 4.3% | coding (507/672 nt) | nfi | endonuclease V |
| ? | NC_000913 | = 4199336 | 83 (0.710) | coding (547/672 nt) | nfi | endonuclease V | |||||
| * | ? | NC_000913 | = 3620868 | NA (NA) | 4 (0.030) | 4/408 | 10.1 | 4.6% | coding (1677/4236 nt) | rhsB | rhs element protein RhsB |
| ? | NC_000913 | = 3621008 | 88 (0.720) | coding (1817/4236 nt) | rhsB | rhs element protein RhsB | |||||
| * | ? | NC_000913 | = 1987441 | 113 (0.930) | 6 (0.050) | 4/410 | 10.1 | 5.2% | intergenic (+13/+66) | ftnB/yecJ | putative ferritin‑like protein/DUF2766 domain‑containing protein YecJ |
| ? | NC_000913 | = 1987450 | 109 (0.940) | intergenic (+22/+57) | ftnB/yecJ | putative ferritin‑like protein/DUF2766 domain‑containing protein YecJ | |||||
| * | ? | NC_000913 | 4542682 = | 108 (0.890) | 4 (0.030) | 4/412 | 10.2 | 3.5% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 120 (1.030) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 4488330 | 118 (0.970) | 4 (0.030) | 4/416 | 10.2 | 3.5% | coding (1013/1083 nt) | lptG | lipopolysaccharide transport system protein LptG |
| ? | NC_000913 | = 4488331 | 109 (0.920) | coding (1014/1083 nt) | lptG | lipopolysaccharide transport system protein LptG | |||||