mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,168,221 | 0 | T | C | 47.5% | 290.0 / inf | 337 | intergenic (+21/‑151) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | NC_000913 | 4,168,215 | 0 | A | T | 46.2% | 310.2 / inf | 327 | intergenic (+15/‑157) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | NC_000913 | 4,168,472 | 0 | G | A | 27.0% | 413.7 / 191.1 | 230 | intergenic (+25/‑169) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,475 | 0 | G | T | 25.7% | 496.7 / 199.7 | 226 | intergenic (+28/‑166) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,476 | 0 | A | G | 25.7% | 435.8 / 174.8 | 227 | intergenic (+29/‑165) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 1,466,201 | 0 | T | C | 21.5% | 281.2 / 55.9 | 121 | pseudogene (810/2518 nt) | ydbA | putative outer membrane protein, N‑terminal fragment |
| Marginal new junction evidence (lowest skew 10 of 33 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 381292 = | NA (NA) | 18 (0.140) | 14/408 | 6.7 | NA | noncoding (33/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381312 = | NA (NA) | noncoding (53/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 4542682 = | 131 (0.990) | 6 (0.050) | 6/408 | 9.7 | 4.8% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 115 (0.910) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 716906 = | 110 (0.830) | 6 (0.050) | 6/406 | 9.7 | 5.2% | intergenic (‑309/+40) | ybfG/potE | PF10964 domain‑containing protein YbfG/putrescine:H(+) symporter/putrescine:ornithine antiporter PotE |
| ? | NC_000913 | 716932 = | 113 (0.900) | intergenic (‑335/+14) | ybfG/potE | PF10964 domain‑containing protein YbfG/putrescine:H(+) symporter/putrescine:ornithine antiporter PotE | |||||
| * | ? | NC_000913 | = 381689 | NA (NA) | 6 (0.050) | 6/408 | 9.7 | NA | noncoding (430/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381743 | NA (NA) | noncoding (484/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 15390 | 140 (1.060) | 5 (0.040) | 5/402 | 10.2 | 3.6% | noncoding (4/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | 16740 = | 138 (1.110) | intergenic (+183/+11) | insL‑1/hokC | IS186/IS421 transposase/protein HokC | |||||
| * | ? | NC_000913 | 4316757 = | 69 (0.520) | 5 (0.040) | 5/412 | 10.3 | 7.0% | coding (462/1137 nt) | phnM | RPnTP hydrolase |
| ? | NC_000913 | 4316815 = | 66 (0.520) | coding (404/1137 nt) | phnM | RPnTP hydrolase | |||||
| * | ? | NC_000913 | 3209283 = | 100 (0.760) | 5 (0.040) | 5/412 | 10.3 | 4.8% | coding (1260/1464 nt) | ttdT | L‑tartrate:succinate antiporter |
| ? | NC_000913 | 3209353 = | 102 (0.800) | coding (1330/1464 nt) | ttdT | L‑tartrate:succinate antiporter | |||||
| * | ? | NC_000913 | 2275832 = | 113 (0.860) | 5 (0.040) | 5/410 | 10.3 | 4.5% | coding (560/1026 nt) | yejE | putative oligopeptide ABC transporter membrane subunit YejE |
| ? | NC_000913 | 2275868 = | 105 (0.830) | coding (596/1026 nt) | yejE | putative oligopeptide ABC transporter membrane subunit YejE | |||||
| * | ? | NC_000913 | = 1287084 | 84 (0.640) | 5 (0.040) | 4/386 | 10.5 | 5.0% | noncoding (153/171 nt) | rttR | small RNA RttR |
| ? | NC_000913 | 1287557 = | 112 (0.940) | noncoding (66/85 nt) | tyrT | tRNA‑Tyr | |||||
| * | ? | NC_000913 | = 3458415 | 118 (0.890) | 4 (0.030) | 4/410 | 10.9 | 3.4% | coding (77/1482 nt) | gspE | Type II secretion system protein GspE |
| ? | NC_000913 | = 3458420 | 115 (0.910) | coding (82/1482 nt) | gspE | Type II secretion system protein GspE | |||||