mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,168,221 | 0 | T | C | 48.9% | 98.7 / 221.3 | 135 | intergenic (+21/‑151) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | NC_000913 | 4,168,215 | 0 | A | T | 46.9% | 117.0 / 227.5 | 130 | intergenic (+15/‑157) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | NC_000913 | 4,168,472 | 0 | G | A | 25.3% | 156.8 / 62.0 | 87 | intergenic (+25/‑169) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,475 | 0 | G | T | 24.1% | 187.6 / 68.3 | 87 | intergenic (+28/‑166) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,476 | 0 | A | G | 24.1% | 169.7 / 59.6 | 87 | intergenic (+29/‑165) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2713829 | 64 (1.380) | 6 (0.140) | 6/404 | 3.6 | 9.3% | coding (934/1335 nt) | srmB | ATP‑dependent RNA helicase SrmB |
| ? | NC_000913 | = 2713908 | 57 (1.300) | coding (1013/1335 nt) | srmB | ATP‑dependent RNA helicase SrmB | |||||
| * | ? | NC_000913 | 381292 = | NA (NA) | 9 (0.200) | 6/408 | 3.7 | NA | noncoding (33/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | 381312 = | NA (NA) | noncoding (53/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 285874 = | 45 (0.970) | 4 (0.090) | 4/410 | 4.4 | 8.6% | coding (480/1383 nt) | yagG | putative D‑xylonate transporter YagG |
| ? | NC_000913 | 285896 = | 42 (0.940) | coding (502/1383 nt) | yagG | putative D‑xylonate transporter YagG | |||||
| * | ? | NC_000913 | 2793104 = | 64 (1.380) | 3 (0.070) | 3/416 | 4.9 | 4.4% | coding (370/1281 nt) | gabT | 4‑aminobutyrate aminotransferase GabT |
| ? | NC_000913 | 2793125 = | 67 (1.480) | coding (391/1281 nt) | gabT | 4‑aminobutyrate aminotransferase GabT | |||||
| * | ? | NC_000913 | = 2213244 | 33 (0.710) | 3 (0.070) | 3/406 | 4.9 | 8.9% | coding (1401/1686 nt) | btsS | high‑affinity pyruvate receptor |
| ? | NC_000913 | = 2213296 | 30 (0.680) | coding (1349/1686 nt) | btsS | high‑affinity pyruvate receptor | |||||
| * | ? | NC_000913 | 1738744 = | 53 (1.150) | 3 (0.070) | 3/410 | 4.9 | 6.1% | coding (901/1026 nt) | purR | DNA‑binding transcriptional repressor PurR |
| ? | NC_000913 | 1738828 = | 42 (0.940) | coding (985/1026 nt) | purR | DNA‑binding transcriptional repressor PurR | |||||