| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 285874 = | 101 (0.900) | 4 (0.040) | 4/410 | 10.4 | 3.8% | coding (480/1383 nt) | yagG | putative D‑xylonate transporter YagG |
| ? | NC_000913 | 285896 = | 106 (0.980) | coding (502/1383 nt) | yagG | putative D‑xylonate transporter YagG | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGAGCAGGTCGCCATCATCTTGAACGCGCACATGATGCGCCACTGGCTGTTGCCCAGCAGCAGCTTAAGGTCTTTCGCCACCGACGAGCCCGGCTGCACCTCAAAGGTGTAGCGCTCTTTGGTCGTGAAGAAGCAGACGTAGAGCAGCACCACGCCGCTCAGCCCCAGCACGCACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/286120‑285874‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgctgGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTGAGGTGCAGCCGGGCTCGTCGGTGGCGAAAGACCTTAAGCTGCTGCTGGGCAACAGCCAGTGGCGCATCATGTGCGCGTTCAAGATGATGGCGACCTGCTCCAACGTGGTGCGCGG > NC_000913/285896‑286134 GGAGCAGGTCGCCATCATCTTGAACGCGCACATGATGCGCCACTGGCTGTTGCCCAGCAGCAGCTTAAGGTCTTTCGCCACCGACGAGCCCGGCTGCACCTCAAAGGTGTAGCGCTCTTTGGTCGTGAAGAAGCAGACGTAGAGCAGCACCACGCCGCTCAGCCCCAGCACGCACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGAT < 1:406681/240‑1GGAGCAGGTCGCCATCATCTTGAACGCGCACATGATGCGCCACTGGCTGTTGCCCAGCAGCAGCTTAAGGTCTTTCGCCACCGACGAGCCCGGCTGCACCTCAAAGGTGTAGCGCTCTTTGGTCGTGAAGAAGCAGACGTAGAGCAGCACCACGCCGCTCAGCCCCAGCACGCACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGAT < 2:42060/240‑1 GTCGCCATCATCTTGAACGCGCACATGATGCGCCACTGGCTGTTGCCCAGCAGCAGCTTAAGGTCTTTCGCCACCGACGAGCCCGGCTGCACCTCAAAGGTGTAGCGCTCTTTGGTCGTGAAGAAGCAGACGTAGAGCAGCACTACGCCGCTCAGCCCCAGCACGCACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCT > 1:1125465/1‑239 GTCGCCATCATCTTGAACGCGCACATGATGCGCCACTGGCTGTTGCCCAGCAGCAGCTTAAGGTCTTTCGCCACCGACGAGCCCGGCTGCACCTCAAAGGTGTAGCGCTCTTTGGTCGTGAAGAAGCAGACGTAGAGCAGCACCACGCCGCTCAGCCCCAGCACGCACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCTG > 1:954607/1‑240 GTCGCCATCATCTTGAACGCGCACATGATGCGCCACTGGCTGTTGCCCAGCAGCAGCTTAAGGTCTTTCGCCACCGACGAGCCCGGCTGCACCTCAAAGGTGTAGCGCTCTTTGGTCGTGAAGAAGCAGACGTAGAGCAGCACCACGCCGCTCAGCCCCAGCACGCACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCTG > 1:958478/1‑240 GTCGCCATCATCTTGAACGCGCACATGATGCGCCACTGGCTGTTGCCCAGCAGCAGCTTAAGGTCTTTCGCCACCGACGAGCCCGGCTGCACCTCAAAGGTGTAGCGCTCTTTGGTCGTGAAGAAGCAGACGTAGAGCAGCACCACGCCGCTCAGCCCCAGCACGCACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGAT > 2:261368/1‑233 CATGATGCGCCACTGGCTGTTGCCCAGCAGCAGCTTAAGGTCTTTCGCCACCGACGAGCCCGGCTGCACCTCAAAGGTGTAGCGCTCTTTGGTCGTGAAGAAGCAGACGTAGAGCAGCACCACGCCGCTCAGCCCCAGCACGCACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCTGGTGAGCATCATCGGCAAAGGGG < 1:973428/239‑1 GATGCGCCACTGGCTGTTGCCCAGCAGCAGCTTAAGGTCTTTCGCCACCGACGAGCCCGGCTGCACCTCAAAGGTGTAGCGCTCTTTGGTCGTGAAGAAGCAGACGTAGAGCAGCACCACGCCGCTCAGCCCCAGCACGCACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGC < 2:608078/209‑1 AGCTCAAGGTCGTTCGCCACCGACGAGCCCGGCTGCACCTCAAAGGTGTAGCGCTCTTTGGTCGTGAAGAAGCAGACGTAGAGCAGCACCACGCCGCTCAGCCCCAGCACGCACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTG < 1:1027303/239‑1 TAAGGTCTTTCGCCACCGACGAGCCCGGCTGCACCTCAAAGGTGTAGCGCTCTTTGGTCGTGAAGAAGCAGACGTAGAGCAGCACCACGCCGCTCAGCCCCAGCACGCACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGC < 1:175772/240‑1 AAAGGTGTAGCGCTCTTTGGTCGTGAAGAAGCAGACGTAGAGCAGCACCACGCCGCTCAGCCCCAGCACGCACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCTGGTGAGCATCATCGGCAAAGGGGACGAGC < 2:611854/173‑1 TAGCGCTCTTTGGTCGTGAAGAAGCAGACGTAGAGCAGCACCACGCCGCTCAGCCCCAGCACGCACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCT > 2:1227045/1‑137 GGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTGAGGTGCAGCCGGGCTCGTCGGTGGCGAAAGACCTTAAGCTGCTGCTGGGCAACAGCCAGTGGCGCATCATGTGCGCGTTCAAGATGATGGCGACCTGCTCCAACGTGGTGCGCGG > 2:229329/1‑240 GGAGCAGGTCGCCATCATCTTGAACGCGCACATGATGCGCCACTGGCTGTTGCCCAGCAGCAGCTTAAGGTCTTTCGCCACCGACGAGCCCGGCTGCACCTCAAAGGTGTAGCGCTCTTTGGTCGTGAAGAAGCAGACGTAGAGCAGCACCACGCCGCTCAGCCCCAGCACGCACATGGCGCCGAAGTAGCCCACCTGCTCGTCCCCTTTGCCGATGATGCTCACCAGCGGCAGCGCGATGCCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/286120‑285874‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgctgGTGAGCATCATCGGCAAAGGGGACGAGCAGGTGGGCTACTTCGGCGCCATGTGCGTGCTGGGGCTGAGCGGCGTGGTGCTGCTCTACGTCTGCTTCTTCACGACCAAAGAGCGCTACACCTTTGAGGTGCAGCCGGGCTCGTCGGTGGCGAAAGACCTTAAGCTGCTGCTGGGCAACAGCCAGTGGCGCATCATGTGCGCGTTCAAGATGATGGCGACCTGCTCCAACGTGGTGCGCGG > NC_000913/285896‑286134 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |