mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,168,221 | 0 | T | C | 45.6% | 140.7 / 215.4 | 147 | intergenic (+21/‑151) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | NC_000913 | 4,168,215 | 0 | A | T | 43.1% | 159.3 / 218.1 | 144 | intergenic (+15/‑157) | rrsB/gltT | 16S ribosomal RNA/tRNA‑Glu |
| * | NC_000913 | 4,168,472 | 0 | G | A | 25.7% | 172.9 / 76.5 | 101 | intergenic (+25/‑169) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,475 | 0 | G | T | 24.7% | 202.5 / 77.5 | 97 | intergenic (+28/‑166) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 4,168,476 | 0 | A | G | 24.7% | 182.6 / 67.6 | 97 | intergenic (+29/‑165) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA |
| * | NC_000913 | 1,466,201 | 0 | T | C | 23.7% | 89.5 / 15.3 | 38 | pseudogene (810/2518 nt) | ydbA | putative outer membrane protein, N‑terminal fragment |
| * | NC_000913 | 1,466,210 | 0 | G | A | 21.1% | 84.6 / 14.7 | 38 | pseudogene (819/2518 nt) | ydbA | putative outer membrane protein, N‑terminal fragment |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3007598 = | 63 (1.140) | 6 (0.120) | 6/400 | 4.3 | 9.5% | coding (89/1197 nt) | ygeX | 2,3‑diaminopropionate ammonia‑lyase |
| ? | NC_000913 | 3007614 = | 56 (1.100) | coding (105/1197 nt) | ygeX | 2,3‑diaminopropionate ammonia‑lyase | |||||
| * | ? | NC_000913 | = 4542690 | 58 (1.050) | 5 (0.090) | 4/414 | 5.2 | 7.7% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 64 (1.210) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 3579387 | 87 (1.580) | 5 (0.090) | 4/412 | 5.2 | 5.9% | coding (259/696 nt) | yhhW | quercetin 2,3‑dioxygenase |
| ? | NC_000913 | = 3579470 | 78 (1.480) | coding (176/696 nt) | yhhW | quercetin 2,3‑dioxygenase | |||||
| * | ? | NC_000913 | 1430276 = | 27 (0.490) | 4 (0.080) | 4/414 | 5.2 | 10.1% | coding (1228/3363 nt) | stfR | Rac prophage; putative membrane protein |
| ? | NC_000913 | 1430422 = | 45 (0.850) | coding (1374/3363 nt) | stfR | Rac prophage; putative membrane protein | |||||
| * | ? | NC_000913 | = 1082873 | 66 (1.200) | 4 (0.080) | 4/412 | 5.2 | 6.8% | coding (631/1128 nt) | efeO | ferrous iron transport system protein EfeO |
| ? | NC_000913 | = 1083021 | 46 (0.870) | coding (779/1128 nt) | efeO | ferrous iron transport system protein EfeO | |||||
| * | ? | NC_000913 | = 3547920 | NA (NA) | 3 (0.060) | 3/404 | 5.6 | NA | noncoding (33/34 nt) | other | REP254a |
| ? | NC_000913 | = 3547936 | NA (NA) | intergenic (+61/+50) | gntT/malQ | high‑affinity gluconate transporter/4‑alpha‑glucanotransferase | |||||
| * | ? | NC_000913 | = 3578118 | 59 (1.070) | 3 (0.060) | 3/416 | 5.7 | 4.4% | coding (609/996 nt) | gntR | DNA‑binding transcriptional repressor GntR |
| ? | NC_000913 | = 3578182 | 75 (1.410) | coding (545/996 nt) | gntR | DNA‑binding transcriptional repressor GntR | |||||
| * | ? | NC_000913 | 1061495 = | 66 (1.200) | 3 (0.060) | 3/416 | 5.7 | 4.4% | coding (2240/2547 nt) | torA | trimethylamine N‑oxide reductase 1 |
| ? | NC_000913 | 1061533 = | 66 (1.240) | coding (2278/2547 nt) | torA | trimethylamine N‑oxide reductase 1 | |||||