| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3701775 = | 72 (0.140) | 4 (0.010) | 4/88 | NT | 5.3% | intergenic (‑710/+201) | dppA/proK | dipeptide transporter/tRNA‑Pro |
| ? | CP009273 | 3701802 = | 85 (0.210) | intergenic (‑737/+174) | dppA/proK | dipeptide transporter/tRNA‑Pro | |||||
Only 100 of 120 total aligned reads displayed.
CGCAGGGCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3701853‑3701775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcaggcttttCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGC > CP009273/3701802‑3701866 CGCAGGGCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACG < 1:26487902/68‑1 GCAGGGCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGA < 1:24332401/68‑1 GCAGGGCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGA < 1:31762281/68‑1 GCAGGGCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGA > 1:15920679/1‑68 CAGGGCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGA > 1:5813848/1‑67 AGGGCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGC > 1:21172256/1‑68 AGGGCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGC > 1:19662703/1‑68 GGGCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCA > 1:22373546/1‑68 GGGCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCA > 1:10363489/1‑68 GGGCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCA > 1:28783124/1‑68 GGGCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCA > 1:12854366/1‑68 GGCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAG > 1:22479865/1‑68 GGCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAG > 1:39794689/1‑68 GGCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAG > 1:25674475/1‑68 GGCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAG > 1:17819218/1‑68 GCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAG > 1:41653660/1‑67 GCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAG > 1:8466995/1‑67 GCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAG > 1:37114025/1‑67 GCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAG > 1:39863740/1‑67 GCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAG > 1:26641808/1‑67 GCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAG > 1:33012770/1‑67 GCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAG > 1:6896834/1‑67 GCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAG > 1:4483481/1‑67 GCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAG > 1:31527351/1‑67 CGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGG < 1:24163924/67‑1 CGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGG < 1:2858564/67‑1 CGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGG < 1:37400468/67‑1 tAGCCACGAAGTGGCGAGTAATCCTCTATCACCGTCCAAATTCGAAAAGCCTGCTCAACGAGCAGGC < 1:42223050/66‑1 gatCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGC < 1:5332413/64‑1 GAGCCACGAAGTGGCGAGTAATCCTCTATCCCCGACCAAATTCGAAAAGCCTGCTCACCGAGCAGGC < 1:11372794/67‑1 GAGCCACGAAGTGGCGAGTAATCCTCTATCACCGCCCAAATTCGAAAAGCCTGCTCAACGAGCAGGC < 1:19555467/67‑1 GAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAACGCCTGCTCAACGAGCAGGC < 1:13354807/67‑1 GAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGCT < 1:30164042/68‑1 GAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGCT < 1:34892322/68‑1 GAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGC < 1:34196488/67‑1 GAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGC < 1:42294322/67‑1 GAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGC < 1:42976077/67‑1 GAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGC < 1:43328626/67‑1 GAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGC < 1:34443850/67‑1 GAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGC < 1:31371253/67‑1 GAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGC < 1:6534352/67‑1 GAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGC < 1:29122075/67‑1 GAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGC < 1:6748409/67‑1 GAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGC < 1:7406110/67‑1 GAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGC < 1:30006701/67‑1 GAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGC < 1:2275834/67‑1 GAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGC < 1:16122118/67‑1 GAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGC < 1:17185756/67‑1 GAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATGCGAAAAGCCTGCTCAACGAGCAGGC < 1:26380727/67‑1 AGCCACGAAGTGGCGAGTAATCCTCTATCCCCGCCCAAATTCGAAAAGCCTGCTCAACGAGCCGGCgt > 1:9551557/1‑66 AGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGCTT > 1:9551553/1‑68 GCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGCTT < 1:1874946/67‑1 GCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGCTT < 1:25086592/67‑1 CCACGAAGTGGCGAGTAATCCTCTATCCCCGACCAAATTCGAAAAGCCTGCTCAACGCGCAGGCTTTT > 1:1500939/1‑68 CCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGCTTTT > 1:41532832/1‑68 CCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGCTTTT > 1:3017749/1‑68 CCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGCTTTT > 1:22734889/1‑68 CCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGCTTTT > 1:17972366/1‑68 CCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGCTTTT > 1:9022304/1‑68 CCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGCTTTT > 1:15849354/1‑68 CCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGCTTTT > 1:29883903/1‑68 CACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCCACGAGCAGGCTTTT < 1:35965139/67‑1 CACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGCTTTT < 1:23854924/67‑1 CACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGCTTT < 1:30224241/66‑1 CGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGCTTTTCGAATTTGGT < 1:66722/67‑1 CTCTATCACCCACCAAATGCGAAACGCCTGCGCAACCAGCAGGCTTTTCGAATTTGGTCGGTGATAGA < 1:3230978/68‑1 CCAAATTCCAAAAGCCTGCTCAACGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCC < 1:41399594/68‑1 CCTGCTCAACGAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCG > 1:25250806/1‑67 GAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCC > 1:12352106/1‑68 GAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCC < 1:2470125/68‑1 GAGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCC > 1:17274238/1‑68 AGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCG > 1:14007102/1‑68 AGCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCG > 1:12160529/1‑68 GCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGT > 1:6015396/1‑68 GCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGT > 1:27680924/1‑68 GCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGT > 1:17792394/1‑68 GCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGT > 1:7829815/1‑68 GCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGT > 1:8638970/1‑68 GCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGT > 1:2841502/1‑68 GCAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGT > 1:25187656/1‑68 CAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTT > 1:19674431/1‑68 CAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTT > 1:36710147/1‑68 CAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTT > 1:27534676/1‑68 CAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTT > 1:26117421/1‑68 CAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTT > 1:14597218/1‑68 CAGGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTT > 1:34092379/1‑68 GGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTT > 1:35772125/1‑66 GGCTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTT > 1:34541684/1‑66 CTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTG > 1:37180716/1‑68 CTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTG > 1:11881371/1‑68 CTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTG > 1:16396042/1‑68 CTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTG > 1:42371766/1‑68 CTTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTG > 1:37117592/1‑68 CTTTTCGAATTTGGTCGGGGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTG < 1:3007143/65‑1 TTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGG < 1:34094018/68‑1 TTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGG < 1:12814613/68‑1 TTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTG < 1:24408331/67‑1 TTTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTACTGG < 1:36242726/68‑1 TTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGC < 1:23265093/68‑1 TTTCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGC < 1:3481964/68‑1 CGCAGGGCGAGCCACGAAGTGGCGAGTAATCCTCTATCACCGACCAAATTCGAAAAGCCTGCTCAACGAGCAGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3701853‑3701775‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcaggcttttCGAATTTGGTCGGTGATAGAGGATTACTCGCCACTTCGTGGCTCGCCCTGCGGGCCGTTGCTGGC > CP009273/3701802‑3701866 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |