| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3729681 | NA (NA) | 5 (0.010) | 4/84 | NT | NA | noncoding (168/171 nt) | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP268 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | CP009273 | = 3729685 | NA (NA) | intergenic (+168/+28) | xylR/bax | xylose divergent operon transcriptional activator/putative glucosaminidase | |||||
Only 100 of 335 total aligned reads displayed.
CCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3729601‑3729681‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccttatccgactTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGT < CP009273/3729685‑3729619 CCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAA > 1:33310985/1‑68 CAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG < 1:21973566/68‑1 CAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG < 1:28190884/68‑1 CAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG < 1:5393372/68‑1 CAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG < 1:13142014/68‑1 CAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG < 1:18715123/68‑1 GGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAG > 1:42164896/1‑66 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTT > 1:22591493/1‑68 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTT > 1:7681604/1‑68 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGC < 1:8939098/65‑1 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGC < 1:34055517/65‑1 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGC < 1:1686793/65‑1 CATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGC < 1:6580284/65‑1 ATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTA < 1:37652212/68‑1 ATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTT < 1:37362275/67‑1 TGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTAT < 1:14392886/68‑1 TAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:28707949/1‑68 TAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG < 1:19534071/68‑1 TAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCC < 1:26364143/67‑1 AAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:15573047/1‑67 AAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:26920979/1‑67 AAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:2911621/1‑67 AAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:4296556/1‑67 AAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCG > 1:31663338/1‑67 AACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACT < 1:737635/68‑1 ACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACT > 1:21698087/1‑67 AACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTC > 1:41213568/1‑68 ttAGCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGCGCTACGAGCC < 1:21264840/66‑1 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCATGCAGTTGAGCTACGAGCCTGA > 1:20507805/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:28042207/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:10607953/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:27365315/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:25747433/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:3050108/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:5241464/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:35487729/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:40860662/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:36911129/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:37473354/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:38994703/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:40781809/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:24516121/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:14702689/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:1528958/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:13949518/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:16426366/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:13793461/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:13696071/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:13321090/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:19004587/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:1226900/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:19371075/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:20932140/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:10099857/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:10948261/1‑68 GCCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA > 1:24008669/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:40322970/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:14073656/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:15795203/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:31182666/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:18490725/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:18399452/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:24347015/1‑68 CCTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:35080259/1‑68 CTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAA > 1:39948810/1‑67 CTTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGA < 1:41844363/66‑1 TTATCCTACTTGTCAGTCGTATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGC < 1:30080116/68‑1 TTATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGC < 1:17779578/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:34420522/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:22261114/68‑1 TATCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCG < 1:38125544/68‑1 TCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTT < 1:42869656/68‑1 TCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTT < 1:35825654/68‑1 TCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTT < 1:8076185/68‑1 TCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTT < 1:23580193/68‑1 TCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTT < 1:1625862/68‑1 TCCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTT < 1:28482958/68‑1 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:9500660/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:6901438/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:11686658/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:36764625/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:33564434/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG < 1:32144744/68‑1 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTG > 1:39307979/1‑68 CCGACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCGGAAGCGTTG > 1:38406785/1‑68 GACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTT > 1:37038302/1‑68 GACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTT > 1:25469953/1‑68 GACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTT > 1:29914812/1‑68 ACTTGTGAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTT < 1:28911704/67‑1 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:12642496/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:24937533/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:25887243/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:6006421/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:43064997/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:3486348/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:17315070/1‑68 ACTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTG > 1:14910772/1‑68 CTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGG > 1:200008/1‑68 CTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGG > 1:22810965/1‑68 CTTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGG > 1:8508343/1‑68 CCAGGCATGATAAAACGCACCAACAACGCTTCAGGCTCGTAGCTCAACTGCCTGAGACAAAGTAAAAAGCCTTATCCGACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3729601‑3729681‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccttatccgactTGTCAGTCGGATAAGGCTTTTTACTTTGTCTCAGGCAGTTGAGCTACGAGCCTGAAGCGTTGTTGGT < CP009273/3729685‑3729619 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |