| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4615686 = | 577 (1.100) | 8 (0.020) | 4/98 | NT | 1.6% | intergenic (+6/‑43) | serB/radA | 3‑phosphoserine phosphatase/DNA repair protein |
| ? | CP009273 | 4615706 = | 490 (1.060) | intergenic (+26/‑23) | serB/radA | 3‑phosphoserine phosphatase/DNA repair protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4615759‑4615686‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcgGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCG > CP009273/4615706‑4615771 AAACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGG < 1:31595778/68‑1AAACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGG < 1:13246359/68‑1 cACAAAGGCGCGTTTTGGAGCTGTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC < 1:16149807/67‑1 AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC > 1:2316923/1‑68 AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC > 1:32185702/1‑68 AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC > 1:19493055/1‑68 AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC > 1:42084314/1‑68 AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC > 1:39235780/1‑68 AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC < 1:17131076/68‑1 AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC > 1:6632156/1‑68 AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC > 1:6673578/1‑68 AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC < 1:27693946/68‑1 AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC > 1:2841357/1‑68 AACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGC > 1:39535543/1‑68 AACAAAGGCGCGTTTAGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCAGCCCGCAGGATGGC > 1:31096830/1‑68 ACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCG > 1:43565583/1‑68 ACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCG > 1:8577924/1‑68 ACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCG > 1:33938467/1‑68 ACAAAGGCGCGTTTTGGAGCTTTTGCCACGATGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCG > 1:34925393/1‑68 ACAAAGGCGCGTTTTGGAGC‑TTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGG > 1:22213601/1‑68 CAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATTGCGG > 1:8177357/1‑68 CAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGG > 1:24036841/1‑68 CAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGG > 1:35389117/1‑68 CAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGG > 1:40397415/1‑68 CAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGG > 1:4553629/1‑68 CAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGG > 1:16820320/1‑68 CAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGG > 1:33086413/1‑68 CAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGG > 1:7063077/1‑68 CAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGG > 1:37304823/1‑68 AAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGG < 1:19095937/68‑1 AAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGG < 1:33452044/68‑1 AAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGGC > 1:26053490/1‑68 AAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGGC > 1:35186514/1‑68 AGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGGCG > 1:32156852/1‑68 AGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGGCG > 1:35454101/1‑68 AGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGGCG > 1:30474199/1‑68 AGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGGCG > 1:3412349/1‑68 AGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGGCG > 1:41295233/1‑68 AGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGGCG > 1:41794069/1‑68 AGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGGCG > 1:35060261/1‑68 AGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGGCG > 1:10984362/1‑68 TTTTGCCCCGGTGTCCCCCGTTAATGCTGGCCCGCCCGCAGGATGGCGGGCGGCACAGCATTAACGAG < 1:19792748/68‑1 TTTTGCCACGGTGTCCCGCGTTAATGCTGTGCCGCCCGCAGGATGGCGGGCGGCACAGCATTAAC < 1:1627930/65‑1 TTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGGCGGCACAGCATTAACGA < 1:32262196/67‑1 TTTTGCCACGGTGTACCTCGTTAATGCTGCGCCGCCCCCCGGAGGGCGGGCGGCACAGCATTAACGA < 1:20141124/67‑1 TTTTGCCACGGTGTACCGCGTTAATGCTGTGCCGCCCGCAGGATCCCGGGCGGCACAGCATTAACGA < 1:5854326/67‑1 TTTTGCCACGGTGAACCTCGTTACTGCTGTGCCGCCCCCAGCAGGGCGGGCGGCACAGCATTAACGA < 1:11396272/67‑1 TTTTGCCACGGTGAACCTCGTTAATGCTCCGCCGCCCGCAGGATGGCGGGCGGCACAGCATTAACGAG < 1:10206327/68‑1 TTGCCACGGTGTACCTCGTTAATGCGGTGCCGCCCCCAGGAGGGCGGGCGGCACAGCATTAACGAGGT < 1:40341542/68‑1 GCGGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGA < 1:38075783/68‑1 GCGGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGA < 1:39987578/68‑1 GCGGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGA > 1:43327489/1‑68 GCGGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGA < 1:8606690/68‑1 GCGGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGA < 1:11977323/68‑1 GCGGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGA > 1:15240465/1‑68 GCGGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGA < 1:22100532/68‑1 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:33955230/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT < 1:12142847/68‑1 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:14961596/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:16288926/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:4889089/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT < 1:18220023/68‑1 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT < 1:1872924/68‑1 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:18907566/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT < 1:21100297/68‑1 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT < 1:4108060/68‑1 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT < 1:40516645/68‑1 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:21580313/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:21786945/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT < 1:33971464/68‑1 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:30890571/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:36037145/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:36596567/1‑68 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT < 1:33548485/68‑1 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT < 1:38431067/68‑1 GGGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCGTTGTTTGTAATGAAT > 1:20847505/1‑68 GGCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAAT > 1:10435879/1‑67 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTTATGAATGC > 1:32723759/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:18225657/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:38956239/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:37267055/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:30969521/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:702583/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:3976428/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:11429158/1‑68 GCGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGC > 1:40219900/1‑68 CGGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCG > 1:39295876/1‑68 AAACAAAGGCGCGTTTTGGAGCTTTTGCCACGGTGTACCTCGTTAATGCTGTGCCGCCCGCAGGATGGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4615759‑4615686‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggcgGCACAGCATTAACGAGGTACACCGTGGCAAAAGCTCCAAAACGCGCCTTTGTTTGTAATGAATGCG > CP009273/4615706‑4615771 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |