| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1161581 | 276 (0.520) | 20 (0.050) | 12/82 | NT | 9.7% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162077 = | 170 (0.440) | coding (537/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
Only 100 of 179 total aligned reads displayed.
CCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1161500‑1161581‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTA > CP009273/1162077‑1162142 CCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTG > 1:34617201/1‑68CCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTG > 1:30003779/1‑68 ATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTC > 1:15540561/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCGATTGAAAAAGATTGTGATTGTCG > 1:18385460/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:36996868/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:19565728/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:39681643/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:38005336/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:18341339/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:26979187/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:41477291/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:42592160/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:37923002/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:28981058/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:39568224/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:822155/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:8669039/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:36843753/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:36657825/1‑68 TTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCG > 1:23354680/1‑68 TTAACAATTGGTTAATAAATTTAAGGCGGTCACGTTGACTACGCCATTGAAAAACATTGTGATTGTCG > 1:10965142/1‑68 TTAACAATTGCTTAATAAATTTAAGGGGGTCACGTAGACTACGCCATTGAAAAAGATAGTGATTGTCG > 1:19292335/1‑68 ACAATTGGTTAATAAATTTAAGGGGTTCACGTTGACTACGCCATTGAAAAAGATTGTGATAGTCGGtg > 1:24938807/1‑66 ACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCG > 1:20484775/1‑68 ACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCG > 1:1690974/1‑68 ACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCG > 1:15257253/1‑68 ACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCG > 1:12287203/1‑68 ACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCG > 1:33220524/1‑68 AATTGGTTAATAAATTTAATGGGGTCACGTTGACTACGCCATTTAAAAATATTGTGATTGTCGGCGGC > 1:9881642/1‑68 AATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGC > 1:32421162/1‑68 AATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGC > 1:38579266/1‑68 AATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGC > 1:37676251/1‑68 ATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCG > 1:5075052/1‑68 ATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCG > 1:728607/1‑68 ATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCG > 1:281957/1‑68 ATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCG > 1:22804440/1‑68 TTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG < 1:29927287/68‑1 TTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG < 1:601563/68‑1 AAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGACGGG > 1:39244200/1‑68 GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGA > 1:18764097/1‑66 GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAAC > 1:4879018/1‑67 TCACGTGGACTACTCCATTCAAAAACATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCC < 1:30471225/68‑1 TCACGTGGACTACGCCATAGCAAAAGATTGCGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTC < 1:39868398/67‑1 GTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCTACGGGTGTTGAACTCTCAGCTc > 1:26535582/1‑67 tgcCTAAGCCATAGAAAAAGATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGA < 1:30179757/64‑1 TGACTACGCCATACAATAAGATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGA < 1:11493099/67‑1 CCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGGCGGGTGTAGAACTCTCCGCTGAATTGCACc > 1:23484598/1‑66 CATTGAAAAAGATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCAGCTGAATTGCGCAA > 1:13363691/1‑67 TGAAAAAGATTGTGATTGTCGGCGGCGGTGCTCCGGGTGTTGAAATCTCCGCTGAATTGCAGAACGCG > 1:9419090/1‑68 AAGATTGTGATTGTCGGCGGCGGCGCGCCGGGTGTAGAAATCTCCGCTCAAATGCACAACGCGGTCc > 1:27473223/1‑66 ATTGTGATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCA < 1:28530871/68‑1 GATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCTGTCAAGCAACTGC < 1:31680327/68‑1 GATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGC < 1:31868196/68‑1 GATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGC < 1:15372567/68‑1 GATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTG < 1:8925887/67‑1 ATTGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGC < 1:33371035/67‑1 TGTCGGCGGCGGCGCGCCGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCGCA > 1:30619612/1‑68 TGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACA < 1:39743333/68‑1 TGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACA > 1:21036355/1‑68 TGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACA > 1:39496291/1‑68 TGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACA < 1:17642256/68‑1 TGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACA > 1:2557045/1‑68 TGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACA < 1:41915536/68‑1 TGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACA < 1:7541849/68‑1 TGTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACA > 1:8774357/1‑68 GTCGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAG < 1:42762321/68‑1 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCT > 1:26577442/1‑68 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGC < 1:17282937/67‑1 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGC < 1:17490133/67‑1 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGC < 1:40801552/67‑1 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGC < 1:14012196/67‑1 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGC < 1:9256344/67‑1 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGC < 1:40123106/67‑1 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGC < 1:33976475/67‑1 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGC < 1:29584964/67‑1 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGC < 1:37198720/67‑1 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGC < 1:1949944/67‑1 CGGCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGGCAAGCAACTGCACAGCT > 1:9778408/1‑68 GCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACACCGCGGTCCACCAACTGCACAGCTAC > 1:34802401/1‑68 GCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCCACTGCACAGCTAC > 1:2831029/1‑68 GCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTAC > 1:10429084/1‑68 GCGGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTAC > 1:6872893/1‑68 cggGGCGCGTCGGGTGAAGAACTCTCCGGTGAATTGCTCAACGCGGTCAAGCAACTGCAGAGCTACGG < 1:29910250/65‑1 GGCGGCGCGACGGGTGTAGAACTCTCCTCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACG < 1:42967095/67‑1 GGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAATGCGGTCAAGCAACTGCACAGCTACGG < 1:16820579/68‑1 GGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGG < 1:39987069/68‑1 GGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACG < 1:43325576/67‑1 GGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACG < 1:15708911/67‑1 GGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACG < 1:42503362/67‑1 GGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACG < 1:14985191/67‑1 GGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACG < 1:32071583/67‑1 GGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACG < 1:1019810/67‑1 GGCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACG < 1:24609878/67‑1 GCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGT > 1:16951794/1‑68 GCGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGT > 1:30951218/1‑68 CGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGT < 1:6119029/67‑1 CGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGT < 1:36402053/67‑1 CGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGT < 1:31578603/67‑1 CGGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGT < 1:11795252/67‑1 GGCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTA < 1:37978312/68‑1 CCATTAATTAACAATTGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/1161500‑1161581‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gattgtcggcggcggCGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAAGCAACTGCACAGCTACGGTTA > CP009273/1162077‑1162142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |