| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2230013 = | NA (NA) | 5 (0.010) | 3/98 | NT | NA | noncoding (1/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | 2230043 = | NA (NA) | noncoding (31/150 nt) | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
Only 100 of 101 total aligned reads displayed.
CGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2230086‑2230013‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCA > CP009273/2230043‑2230108 CGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCA > 1:20544836/1‑68CGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCA < 1:22631888/68‑1CGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCA > 1:6627896/1‑68CGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCA > 1:29447710/1‑68CGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCA > 1:12200631/1‑68CGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCA < 1:34280894/68‑1 GCCTTCAATAAGCTCAACATAATGATTTGTATCGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCAT > 1:5034497/1‑67 GCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCAT > 1:15890814/1‑67 GCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCAT > 1:25233711/1‑67 GCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGACGCAT > 1:9430052/1‑67 GCCTACAATAAGCTCAACATACTGATTAGTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCAT > 1:32783950/1‑67 ccgACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCATCC > 1:5834752/4‑68 CCTACTATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCATC < 1:8176047/67‑1 CCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCATCC > 1:4448652/1‑68 CCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCATCC > 1:37959754/1‑68 CCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCATC < 1:32949518/67‑1 CCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCATC < 1:32641081/67‑1 CCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCATC < 1:38251895/67‑1 CCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCATC < 1:40339426/67‑1 CCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATAAGGAGTTCAAGCCGCATCC > 1:32591197/1‑68 CTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCATCCG < 1:1709266/68‑1 TACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCATCCGG < 1:40615457/68‑1 ACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCATCCGGC > 1:2113776/1‑68 GTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCATCCGGCCTACAAAACCATACAAATCAGTAT < 1:5457668/68‑1 GTATGGTTTTGTAGGCCGCATAAGGCGTTCAAGCCGCACCCGGCCTACAAAACCATACAAATCAGTAT < 1:11738183/68‑1 TTTGTCGCCCGTATAAGGGGTTCAAGCCGCATCCGGCCTACAAAACCATACAAATCAGTATGTTGAGC < 1:41312942/68‑1 TTTGTAGGCCGTATAAGGCGTGCAAGCCGAATCCGGCCTACAAAACCATACAAATCAGTATGTTGAG < 1:32783160/67‑1 TTTGTAGGCCGGATAAGGCGTTCAAGCCGCAGCCGGCCTACAAAACCATACAAATCAGTATGTTGAGC < 1:35417519/68‑1 TCCGGCCTGCAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGT > 1:35795254/1‑68 TCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGT > 1:29937386/1‑68 TCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGT > 1:13185154/1‑68 TCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGT > 1:34001875/1‑68 TCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGT < 1:6072861/68‑1 TCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGT < 1:25100078/68‑1 TCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGT > 1:2664113/1‑68 TCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGT < 1:6119410/68‑1 TCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGT > 1:31524337/1‑68 TCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGT < 1:36974215/68‑1 TCCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGT > 1:2020735/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTTAGATTATTGTAGGCCGGATAAAACGCGCCATCGTT > 1:16272497/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:40520457/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:10451465/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:796860/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:33319337/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:34922851/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:35106112/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:35681423/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:36827328/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:37474208/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:4071346/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:39604152/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:39926983/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:10380816/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:31073861/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:10592724/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:14365633/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:14889040/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:25440954/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:16881182/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:17900065/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:18845219/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:23639245/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:20239583/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:22256712/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:22930090/1‑68 CCGGCCTACAAAACCATACAAATCAGTATGGTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:14102199/1‑68 CGGCCTACAACACCATACAAATCAGTATGTTCAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:32079051/1‑67 CGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTG < 1:11345134/68‑1 CGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:21920245/1‑67 CGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:9139465/1‑67 CGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:11692343/1‑67 CGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:2562159/1‑67 CGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:14122625/1‑67 CGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:25489982/1‑67 CGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:5454173/1‑67 CGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:14957838/1‑67 CGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:42461230/1‑67 CGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:16520000/1‑67 CGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:40868383/1‑67 CGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:34592220/1‑67 CGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:24659699/1‑67 CGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:35659827/1‑67 CGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:18970591/1‑67 CGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:19207453/1‑67 CGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:19508652/1‑67 CGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:38822988/1‑67 CGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:19702912/1‑67 CGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:38505672/1‑67 CGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTT > 1:19645122/1‑67 CGGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGGAGGCCGGATAAAACGCGCCAGCGTT > 1:8015425/1‑67 GGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGC < 1:4049486/68‑1 GGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGC < 1:3370072/68‑1 GGCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGC < 1:24687600/68‑1 GCCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCA > 1:23105274/1‑68 CCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCA > 1:11993983/1‑67 CCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCA > 1:37310055/1‑67 CCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCA > 1:20505629/1‑67 CCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCA < 1:3011250/67‑1 CCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCG < 1:41345741/56‑1 CCTACAAAACCATACAAATCAGTAAGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCA > 1:32577976/1‑67 CGGCCTACAATAAGCTCAACATACTGATTTGTATGGTTTTGTAGGCCGGATAAGGCGTTCAAGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/2230086‑2230013‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACAAAACCATACAAATCAGTATGTTGAGCTTATTGTAGGCCGGATAAAACGCGCCAGCGTTGCA > CP009273/2230043‑2230108 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |