New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3487124NA (NA)3 (0.010)
+C		 3/110 NT NA noncoding (8/26 nt) REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences
?CP009273 = 3487133 NA (NA)noncoding (17/26 nt) REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences

CCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3487078‑3487124
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGTCAGG  <  CP009273/3487133‑3487093
                                               |                                         
CCGTCAGCATAACACCCTGACCTCTCATTTATTGCTCATGCCGGGCGCCGATAGTGGCGTGCGGCATG                       >  1:3127729/1‑68
             ACCCTGACCTCTCATTAATTGCTCATGCCGGACGCCGATAGTGCCGTCCGGCATGAGCAATTAATGAG          >  1:15713887/1‑68
                     CTCTCATTAATTGCTCATGCCGGACGCCGATAGTGCCGTCCGGCATGCGCAATTAATGAGAGGTCAGG  >  1:10202786/1‑68
                                               |                                         
CCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/3487078‑3487124
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGTCAGG  <  CP009273/3487133‑3487093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.