| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3921522 | 477 (0.910) | 26 (0.060) | 10/100 | NT | 5.7% | coding (1442/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein |
| ? | CP009273 | = 3921534 | 431 (0.920) | coding (1430/1452 nt) | viaA | stimulator of RavA ATPase activity; von Willebrand factor domain protein | |||||
Only 100 of 800 total aligned reads displayed.
AGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGAT > CP009273/3921455‑3921589 | aGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCC > 1:38267017‑M1/1‑68 (MQ=255) tgtgGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCa > 1:41727886/1‑67 (MQ=255) tgtgGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCa > 1:35757850/1‑67 (MQ=255) gtgGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGc > 1:11683306/1‑68 (MQ=255) gtgGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGc > 1:37862947/1‑68 (MQ=255) gtgGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGc > 1:29744314/1‑68 (MQ=255) gtgGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGc > 1:2502741/1‑68 (MQ=255) gtgGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGc > 1:15287420/1‑68 (MQ=255) ggAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCg < 1:10244240/67‑1 (MQ=255) ggAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCg < 1:43115875/67‑1 (MQ=255) ggAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCg < 1:40121526/67‑1 (MQ=255) ggAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCg < 1:27155278/67‑1 (MQ=255) gAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCg > 1:14790289/1‑66 (MQ=255) aGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCg > 1:39782507/1‑65 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCt > 1:10050141/1‑67 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:14528923/1‑68 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:39295922/1‑68 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:7391879/1‑68 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:24586781/1‑68 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:3428050/1‑68 (MQ=255) gTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg > 1:26565552/1‑68 (MQ=255) aTGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg < 1:16028591/66‑1 (MQ=255) aTGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGa > 1:22801158/1‑67 (MQ=255) aTGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGa > 1:8205423/1‑67 (MQ=255) aTGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGa > 1:43500867/1‑67 (MQ=255) aTGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGa > 1:10482918/1‑67 (MQ=255) aTGGCCAGCTGCTGTGCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTg < 1:25538708/66‑1 (MQ=255) ggCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCa > 1:4586956/1‑68 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:32812056‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:6368870‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:5534536‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:14976914‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:18345386‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:1906165‑M2/68‑2 (MQ=255) gCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAg < 1:19685671‑M2/68‑2 (MQ=255) cAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggc < 1:16530992‑M2/68‑4 (MQ=255) gctgTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCt > 1:83683/1‑67 (MQ=255) gagaGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCg < 1:17894459/68‑1 (MQ=255) gagaGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCg < 1:8614708/68‑1 (MQ=255) agagCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCgg > 1:530226/1‑68 (MQ=255) agagCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCgg > 1:32286786/1‑68 (MQ=255) agCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTa > 1:42272879/1‑68 (MQ=255) agCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTa > 1:36124702/1‑68 (MQ=255) agCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTa > 1:19451049/1‑68 (MQ=255) gCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTa > 1:1200300/1‑67 (MQ=255) gTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggcgataaattattacagc > 1:32362690‑M2/1‑45 (MQ=255) gTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAggcggcgataaattattacagc > 1:27771716‑M2/1‑45 (MQ=255) gTCCCTTCTCTGCAGTAATAATTTATCGCCGCCCGCGTCTGAGCAggcggcgataaattattacagc > 1:21723823‑M2/1‑45 (MQ=255) cccTTCTCTTCTGTAATAATTTATCGCCGCCAGCGTCTTAGCAggcggcgataaattattacagcaga > 1:25273860‑M2/1‑43 (MQ=255) cccTTCTCTGCTGTAATAATTTATCGCCGCCtgctcagacgctggcggcgataaattattacagcaga > 1:21539526‑M1/1‑31 (MQ=255) cccTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCaaa > 1:4917914/1‑68 (MQ=255) cTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgc < 1:18661081/68‑1 (MQ=255) ttCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg < 1:9185655/68‑1 (MQ=255) ttCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg < 1:12537796/68‑1 (MQ=255) ttCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg < 1:17463341/68‑1 (MQ=255) ttCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAgcg < 1:34565973/68‑1 (MQ=255) ctctGCTGTAATAATTTATCGCCGCCACCGTCTGAGCAGGCGGCATCGCATCCCGGAATCAAAGCGcc > 1:602861/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:4284503/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:40521675/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:13430412/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:23474780/1‑68 (MQ=255) tctGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCa > 1:36902145/1‑68 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAg < 1:22512628/68‑1 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAg < 1:30759655/68‑1 (MQ=255) ctgctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAg > 1:20509756/1‑68 (MQ=255) gctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGat > 1:14075946/1‑68 (MQ=255) gctgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGat > 1:20152466/1‑68 (MQ=255) gctgTAACAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGat > 1:10935433/1‑68 (MQ=255) tgTAATAATTTATCGCCGCCtgctcagacgctggcggcgataaattattacagcagagaagggacgc > 1:33731969‑M1/1‑20 (MQ=255) tgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGatat > 1:28599245/1‑68 (MQ=255) tgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGatat > 1:3035336/1‑68 (MQ=255) tgTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGatat > 1:13074150/1‑68 (MQ=255) aataatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGa < 1:31118751/67‑1 (MQ=255) aataatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGa < 1:6642551/67‑1 (MQ=255) aataatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGa < 1:31683128/67‑1 (MQ=255) aataatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGa < 1:41281884/67‑1 (MQ=255) ataatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATc < 1:15824617/68‑1 (MQ=255) taatTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCg > 1:34952628/1‑68 (MQ=255) atTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGaa < 1:12790613/68‑1 (MQ=255) atTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGaa < 1:38789857/68‑1 (MQ=255) tttATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCATAGCGCCAGATATGATCGaaa > 1:25963524/1‑68 (MQ=255) tttATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGaaa > 1:6990538/1‑68 (MQ=255) tttATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGaaa > 1:2939323/1‑68 (MQ=255) tttATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGaaa > 1:16816482/1‑68 (MQ=255) ttATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGaaaa > 1:26287872/1‑68 (MQ=255) tttCGGCGCCAGCGTCTGAGCAGGCGGCTTGGGTTGCCTGTATCAAAGCGCCAGATATGATCGAAAAt < 1:28972785/66‑1 (MQ=255) gccgcctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgatcagca > 1:8856554‑M1/1‑6 (MQ=255) gccgccAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATgcgc > 1:33403629/1‑68 (MQ=255) gccgccAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATgcgc > 1:21086653/1‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:24144312‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:9608296‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:20907729‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:7895255‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:23927650‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:37571803‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:28354378‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:34760985‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctggc < 1:36605040‑M1/68‑68 (MQ=255) ctgctcagacgctggcggcgataaattattacagcagagaagggacgctctcgcgaacagcagctgg < 1:36353774‑M1/67‑67 (MQ=255) cAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCatgat < 1:23097693/68‑1 (MQ=255) | AGTGTGGAGTATGGCCAGCTGCTGTTCGCGAGAGCGTCCCTTCTCTGCTGTAATAATTTATCGCCGCCAGCGTCTGAGCAGGCGGCTTCGCATCCCGGTATCAAAGCGCCAGATATGATCGAAAATGCGCATGAT > CP009273/3921455‑3921589 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |