| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4225304 = | NA (NA) | 7 (0.020) | 4/90 | NT | NA | coding (1619/1650 nt) | pgi | glucosephosphate isomerase |
| ? | CP009273 | 4225339 = | NA (NA) | intergenic (+4/‑495) | pgi/yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein | |||||
Only 100 of 825 total aligned reads displayed.
AACCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACG > CP009273/4225237‑4225371 | ccgcgtcgcatcaggcatcggttgccggatgcggcgtgaacgccttatccggcctacatatcgacgat > 1:23643326‑M1/68‑68 (MQ=255) aCCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCTGCCACGATAGCTCGACCAATGGTCTG < 1:8969017‑M1/68‑1 (MQ=255) aCCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTG < 1:17189083‑M1/68‑1 (MQ=255) tCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACC > 1:10420586‑M1/1‑68 (MQ=255) tCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACC < 1:22983104‑M1/68‑1 (MQ=255) tCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACC < 1:2342768‑M1/68‑1 (MQ=255) tCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACC < 1:24840651‑M1/68‑1 (MQ=255) tCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACC > 1:15983519‑M1/1‑68 (MQ=255) tCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACC < 1:7010535‑M1/68‑1 (MQ=255) tCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACC < 1:10684977‑M1/68‑1 (MQ=255) tCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACC < 1:8586758‑M1/68‑1 (MQ=255) tCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACC < 1:9253327‑M1/68‑1 (MQ=255) cTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACC > 1:26306491‑M1/1‑67 (MQ=255) atcaggcatcggttgccggatgcggcgtgaacgccttatccggcctacatatcgacgaTGATTAAcc < 1:733192‑M1/9‑1 (MQ=255) tcaggcatcggttgccggatgcggcgtgaacgccttatccggcctacatatcgacgaTGATTAACCGc > 1:36237863‑M1/58‑68 (MQ=255) tGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGC < 1:6726318‑M1/68‑1 (MQ=255) tGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGC < 1:18000386‑M1/68‑1 (MQ=255) tGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGC < 1:16280010‑M1/68‑1 (MQ=255) tGCCAGAGCTGAAAGATGATAAAGAAAACAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGC < 1:20477235‑M1/68‑1 (MQ=255) gCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCt < 1:37995208/68‑1 (MQ=255) gCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCt < 1:43229354/68‑1 (MQ=255) gCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCt > 1:4829943/1‑68 (MQ=255) gCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCt < 1:28122740/68‑1 (MQ=255) gCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCt < 1:20842627/68‑1 (MQ=255) ccAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCta > 1:10901031/1‑68 (MQ=255) ccAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCta > 1:7726855/1‑68 (MQ=255) ccAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCta > 1:1164080/1‑68 (MQ=255) ccAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCta > 1:24172185/1‑68 (MQ=255) cAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCtat < 1:2898242/68‑1 (MQ=255) cAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCtat < 1:25884726/68‑1 (MQ=255) cAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCtat < 1:29947611/68‑1 (MQ=255) cAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCtat < 1:3572048/68‑1 (MQ=255) cAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCtat < 1:36835525/68‑1 (MQ=255) cAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCtat < 1:16674180/68‑1 (MQ=255) gCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATaaa > 1:34110144/1‑67 (MQ=255) cTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGc > 1:13479126/1‑68 (MQ=255) gatgatAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGgc > 1:9583106/1‑67 (MQ=255) gatgatAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGgc > 1:13133303/1‑67 (MQ=255) gatgatAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGgc > 1:5925059/1‑67 (MQ=255) tgatAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCgcg > 1:14347493‑M2/1‑65 (MQ=255) tgatAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCgcg > 1:27750837‑M2/1‑65 (MQ=255) tAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCgcggtt > 1:41555802‑M2/1‑62 (MQ=255) tAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCgcggt > 1:1767221‑M2/1‑62 (MQ=255) tAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCgcggt > 1:520536‑M2/1‑62 (MQ=255) tAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCgcggt > 1:15032879‑M2/1‑62 (MQ=255) tAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCgcggt > 1:3868624‑M2/1‑62 (MQ=255) tAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCgcggt > 1:225881‑M2/1‑62 (MQ=255) tAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCgcggt > 1:24646961‑M2/1‑62 (MQ=255) tAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCgcggt > 1:19508989‑M2/1‑62 (MQ=255) tAAAGAAAGCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCgcggt > 1:30439202‑M2/1‑62 (MQ=255) tAAACAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCgcggt > 1:4044655‑M2/1‑62 (MQ=255) aaaGAAATCAGCGGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCgcggtta > 1:7566987‑M2/1‑61 (MQ=255) aaaGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCgccacgctttatagcggtta < 1:5480737‑M1/68‑21 (MQ=255) aaGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCgcggttaa > 1:33142373‑M2/1‑60 (MQ=255) aGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCgcggttaa < 1:31106328‑M2/67‑9 (MQ=255) aGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCgcggttaa < 1:31887608‑M2/67‑9 (MQ=255) gAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCgcggttaatc < 1:12491798‑M2/68‑11 (MQ=255) aaTCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCgcggttaatca < 1:39184039‑M2/67‑12 (MQ=255) aaTCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAatcat < 1:12854862/68‑1 (MQ=255) aTCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAatcatc < 1:21158666/68‑1 (MQ=255) aTCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAatcatc < 1:37405649/68‑1 (MQ=255) cagcagCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCAtcgt < 1:42591325/68‑1 (MQ=255) cagcagCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCAtcgt < 1:344708/68‑1 (MQ=255) gcagcCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCAtcgtcg > 1:32900366/1‑68 (MQ=255) gcagcCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCAtcgtcg > 1:32297243/1‑68 (MQ=255) agcCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCAtcgtcg < 1:42928548/66‑1 (MQ=255) agcCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCAtcgtc < 1:38433868/65‑1 (MQ=255) agcCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCAtcgtc < 1:6383874/65‑1 (MQ=255) agcCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCAtcgtc < 1:26720532/65‑1 (MQ=255) agcCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCAtcgtc < 1:22299624/65‑1 (MQ=255) agcCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGa < 1:12094327/67‑1 (MQ=255) gcCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGata > 1:13906413/1‑68 (MQ=255) cACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGata < 1:14721056/66‑1 (MQ=255) cACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGata < 1:19959599/66‑1 (MQ=255) cACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGata < 1:28491033/66‑1 (MQ=255) cACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAACCATCGTCGatat < 1:19147050/67‑1 (MQ=255) cACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGAGCGGTTAATCATCGTCGatat < 1:18557130/67‑1 (MQ=255) cGATAGCTCGACCAATGGTCTGATTAACCGCgccacccgttatcgcggttaatcagaccattggtcga < 1:39918507‑M1/68‑38 (MQ=255) gATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAg < 1:18342784/68‑1 (MQ=255) gATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAg < 1:21665390/68‑1 (MQ=255) aTAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAg > 1:1532251/1‑67 (MQ=255) cTCGACCAATGGTCTGATTAACCGCgccacgctttatagcggttaatcagaccattggtcgagctatc > 1:34771627‑M1/1‑25 (MQ=255) cTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCgg > 1:41317120/1‑68 (MQ=255) tCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCgg < 1:24402772/67‑1 (MQ=255) tCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCgg < 1:25479022/67‑1 (MQ=255) tCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCgg < 1:27217994/67‑1 (MQ=255) tCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCgg < 1:33800865/67‑1 (MQ=255) tCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCgg < 1:10022116/67‑1 (MQ=255) tCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCg < 1:37062113/66‑1 (MQ=255) tCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCg < 1:29321089/66‑1 (MQ=255) tCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGa > 1:25097426/1‑68 (MQ=255) tCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGa > 1:3534039/1‑68 (MQ=255) tCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGa < 1:18775428/68‑1 (MQ=255) aCCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATaa > 1:40876827/1‑68 (MQ=255) cAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAgg < 1:43640234/68‑1 (MQ=255) aTGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCg < 1:4644152/68‑1 (MQ=255) gTCTGATTAACCGCTATAAAGCGTGGCgcggttaatcagaccattggtcgagctatcgtggctgcgga < 1:36398040‑M2/68‑42 (MQ=255) gTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTc > 1:19701482/1‑68 (MQ=255) gTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTc > 1:39512050/1‑68 (MQ=255) gTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTc > 1:3147444/1‑68 (MQ=255) | AACCGTATTCTGCCAGAGCTGAAAGATGATAAAGAAATCAGCAGCCACGATAGCTCGACCAATGGTCTGATTAACCGCTATAAAGCGTGGCGCGGTTAATCATCGTCGATATGTAGGCCGGATAAGGCGTTCACG > CP009273/4225237‑4225371 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |