| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4315623 = | NA (NA) | 8 (0.020) | 7/98 | NT | 25.8% | noncoding (5/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | CP009273 | 4316055 = | 23 (0.050) | noncoding (437/583 nt) | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
Only 100 of 961 total aligned reads displayed.
CATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCT > CP009273/4315556‑4315689 | tacaaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacggtgccgactg > 1:25868676‑M1/68‑68 (MQ=255) atgatgGTGACCTCAGTTAAGAGAAGCCAGTTAAGTTTAGTTCGAAATTTATACAGATGAGAggcggc < 1:23075363/68‑1 (MQ=255) acaaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacggtgccgactGc > 1:5468939‑M1/67‑68 (MQ=255) acaaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacggtgccgactGc > 1:17720426‑M1/67‑68 (MQ=255) acaaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacggtgccgactGc > 1:29322552‑M1/67‑68 (MQ=255) gatgGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCt < 1:15468372/68‑1 (MQ=255) aaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacggtgccgactg < 1:7152423‑M1/1‑1 (MQ=255) aaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacggtgccgactg < 1:13123008‑M1/1‑1 (MQ=255) aaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacggtgccgactg < 1:41882360‑M1/1‑1 (MQ=255) aaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacggtgccgactg < 1:27386755‑M1/1‑1 (MQ=255) aaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacggtgccgactg < 1:4644616‑M1/1‑1 (MQ=255) aaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacggtgccgactg < 1:37715483‑M1/1‑1 (MQ=255) aaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacggtgccgactg < 1:32429589‑M1/1‑1 (MQ=255) aaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacggtgccgactg < 1:40226298‑M1/1‑1 (MQ=255) aaattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacggtgccgactg < 1:17286446‑M1/1‑1 (MQ=255) atgGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTg > 1:35851788/1‑68 (MQ=255) aattcccgcaccctccgtaggccggataaggcgtttacgccgcatccggcaacggtgccgactGCCTg < 1:2008198‑M1/5‑1 (MQ=255) tgGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGa < 1:37208780/68‑1 (MQ=255) ggTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGAt > 1:30077306/1‑68 (MQ=255) ggTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGAt > 1:14586663/1‑68 (MQ=255) ggTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGAt > 1:40450128/1‑68 (MQ=255) ggTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGAt > 1:34514500/1‑68 (MQ=255) ggTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGAt > 1:41038653/1‑68 (MQ=255) ggTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGAt > 1:21685227/1‑68 (MQ=255) ccTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGAc > 1:28473800/1‑68 (MQ=255) ccTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGAc > 1:1000009/1‑68 (MQ=255) ccTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGAc > 1:9279063/1‑68 (MQ=255) ccTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGAc > 1:11485054/1‑68 (MQ=255) ccTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGAc > 1:28231809/1‑68 (MQ=255) ccTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGAc > 1:20602349/1‑68 (MQ=255) ccTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGAc > 1:36836163/1‑68 (MQ=255) tAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGa > 1:6373851/1‑67 (MQ=255) tAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAg < 1:26868231/68‑1 (MQ=255) aaGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGc < 1:38982188/68‑1 (MQ=255) gagaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAgag > 1:23682867/1‑65 (MQ=255) gagaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCg > 1:31250536/1‑67 (MQ=255) gagaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCg > 1:34178225/1‑67 (MQ=255) gagaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCg > 1:36242420/1‑67 (MQ=255) gagaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCg > 1:3487272/1‑67 (MQ=255) gagaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCg > 1:32115728/1‑67 (MQ=255) gagaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCg > 1:8905741/1‑67 (MQ=255) gagaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCg > 1:5812391/1‑67 (MQ=255) gagaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCg > 1:17953550/1‑67 (MQ=255) gagaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCg > 1:12206630/1‑67 (MQ=255) gagaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCg > 1:18198321/1‑67 (MQ=255) gagaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCg > 1:18503552/1‑67 (MQ=255) gagaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCg > 1:6859609/1‑67 (MQ=255) gagaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCg > 1:43053882/1‑67 (MQ=255) gaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTc > 1:28944256/1‑67 (MQ=255) gaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTc > 1:15050934/1‑67 (MQ=255) gaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTc > 1:22358736/1‑67 (MQ=255) gaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTc > 1:39451309/1‑67 (MQ=255) gaAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTc > 1:25417278/1‑67 (MQ=255) tgCCAGTTAAGTGTAGTGCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGc < 1:41347578/66‑1 (MQ=255) aGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGc < 1:27755986/67‑1 (MQ=255) ccAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATc > 1:13899159/1‑68 (MQ=255) tAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAgg < 1:24455454/66‑1 (MQ=255) tAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCa > 1:24940916/1‑68 (MQ=255) aaGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGGGCGAGCGTCGCATCAGGCAg < 1:31793653/68‑1 (MQ=255) aaGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAg > 1:16555882/1‑68 (MQ=255) aaGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAg < 1:22812580/68‑1 (MQ=255) aaGTGTAGTTCGAAATTTATACAGATCAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAg < 1:1594566/68‑1 (MQ=255) aGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAg > 1:5218723/1‑67 (MQ=255) aGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGt < 1:39851917/68‑1 (MQ=255) gtgtAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTc > 1:9616142/1‑68 (MQ=255) gtAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCgg < 1:6071556/68‑1 (MQ=255) gtAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCg > 1:17070576/1‑67 (MQ=255) gtAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCg > 1:10695439/1‑67 (MQ=255) tCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGc > 1:11933939/1‑64 (MQ=255) tCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGc > 1:24011927/1‑64 (MQ=255) cGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGt < 1:3803864/68‑1 (MQ=255) cGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGt < 1:21997506/68‑1 (MQ=255) taCAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGAt > 1:14117591/1‑67 (MQ=255) taCAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGAt > 1:41585707/1‑67 (MQ=255) taCAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATg < 1:43630194/68‑1 (MQ=255) gaCAGATGAGAGGCGGCCTGATAAGAAGCGCGAGCGTCGCATCAGGCAGTCTGCACTGTTGACGGAt > 1:8384564/2‑67 (MQ=18) aCAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgc > 1:21165867/1‑68 (MQ=255) aCAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgc > 1:30651889/1‑68 (MQ=255) cAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcg > 1:26141540/1‑68 (MQ=255) aGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcg > 1:1961964/1‑67 (MQ=255) gATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcggc > 1:1909942/1‑68 (MQ=255) tGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcggcg < 1:18879322/67‑1 (MQ=255) tGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcgg < 1:4241802/65‑1 (MQ=255) tGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATgcg < 1:32786554/64‑1 (MQ=255) tGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGt > 1:10218439/1‑68 (MQ=255) tGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGt > 1:35286218/1‑68 (MQ=255) gagGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTaa > 1:2646148/1‑67 (MQ=255) ggcggcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAAc > 1:33519069/1‑67 (MQ=255) ggcggcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAAc > 1:7546439/1‑67 (MQ=255) ggcggcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAAc > 1:12642885/1‑67 (MQ=255) ggcggcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAAc > 1:10938488/1‑67 (MQ=255) ggcggcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAAc > 1:40683722/1‑67 (MQ=255) ggcggcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAAc > 1:23389907/1‑67 (MQ=255) ggcggcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAAc > 1:38439560/1‑67 (MQ=255) ggcggcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAAc > 1:33248314/1‑67 (MQ=255) cggcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACg < 1:2964640/66‑1 (MQ=255) cggcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACg < 1:29897773/66‑1 (MQ=255) cggcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGc < 1:13575517/67‑1 (MQ=255) cggcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGc < 1:8081886/67‑1 (MQ=255) ggcCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCt < 1:199055/68‑1 (MQ=40) | CATGATGGTGACCTCAGTTAAGAGAAGCCAGTTAAGTGTAGTTCGAAATTTATACAGATGAGAGGCGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCT > CP009273/4315556‑4315689 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |