| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4548130 | 430 (0.820) | 22 (0.050) | 6/88 | NT | 6.1% | intergenic (‑24/+41) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | CP009273 | = 4548153 | 335 (0.810) | intergenic (‑47/+18) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
Only 100 of 878 total aligned reads displayed.
CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCAC > CP009273/4548063‑4548197 | aTTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCt < 1:38907742/68‑1 (MQ=255) aTTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCt < 1:29966090/68‑1 (MQ=255) ttCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCggg < 1:26619021/67‑1 (MQ=255) tCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCa < 1:18438002/68‑1 (MQ=255) aaTATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAtt < 1:36188575/68‑1 (MQ=255) aaTATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAtt < 1:2455838/68‑1 (MQ=255) atatTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAt > 1:43185440/1‑66 (MQ=255) atatTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAt > 1:12231376/1‑66 (MQ=255) atatTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAt > 1:27503237/1‑66 (MQ=255) atatTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAt > 1:34384428/1‑66 (MQ=255) tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:34958082/1‑68 (MQ=255) tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:27888022/1‑68 (MQ=255) tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:282319/1‑68 (MQ=255) tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:28561095/1‑68 (MQ=255) tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:18787144/1‑68 (MQ=255) tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:37984263/1‑68 (MQ=255) tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:42970137/1‑68 (MQ=255) tattatGCAAAATCGCACCACAGTCATCCATTACGTTATACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:25440706/1‑68 (MQ=255) attatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:5465777/1‑67 (MQ=255) attatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:17321836/1‑67 (MQ=255) attatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:16249512/1‑67 (MQ=255) attatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:33141966/1‑67 (MQ=255) ttatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTAc < 1:24225747/68‑1 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc > 1:1079022/1‑68 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc < 1:21170930/68‑1 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc < 1:26394586/68‑1 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc > 1:2977053/1‑68 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc > 1:32355088/1‑68 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc > 1:37620916/1‑68 (MQ=255) aaaaTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCa < 1:14807860/67‑1 (MQ=255) aaaaTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCAt > 1:19314113/1‑68 (MQ=255) aTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCg < 1:22275224‑M2/68‑2 (MQ=255) aTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCg < 1:3963981‑M2/68‑2 (MQ=255) gCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggc > 1:17937980‑M2/1‑64 (MQ=255) accacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcg < 1:16861915‑M2/67‑6 (MQ=255) ccacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCACTCgggcggc > 1:6847658‑M2/1‑61 (MQ=255) gTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgaca < 1:13805186‑M2/68‑13 (MQ=255) cATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctga > 1:1278508‑M2/1‑54 (MQ=255) cATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACaa > 1:11866978/1‑67 (MQ=255) cATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACaa > 1:24945156/1‑67 (MQ=255) tCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCg < 1:8166301/68‑1 (MQ=255) tCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCg < 1:29227531/68‑1 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGt > 1:35846358/1‑68 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGt > 1:31920318/1‑68 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGt > 1:7634668/1‑68 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGt > 1:39380746/1‑68 (MQ=255) aTTACGTTTTACTCTGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaa > 1:13356528‑M1/1‑26 (MQ=255) aTTACGTTTTACTCTGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaa > 1:42320334‑M1/1‑26 (MQ=255) aTTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGttt > 1:16608177/1‑68 (MQ=255) tACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTaa > 1:8729651/1‑68 (MQ=255) tACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGGTTaa > 1:40384202/1‑68 (MQ=255) cGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAg > 1:38694493/1‑67 (MQ=255) gTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGcc > 1:40932481/1‑68 (MQ=255) gTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGcc > 1:41291478/1‑68 (MQ=255) gTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGcc > 1:11561296/1‑68 (MQ=255) tttACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGt < 1:7037751/68‑1 (MQ=255) tttACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGt < 1:31218508/68‑1 (MQ=255) tttACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGt < 1:29007559/68‑1 (MQ=255) aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc > 1:4807924/1‑68 (MQ=255) aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc > 1:2383317/1‑68 (MQ=255) aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc > 1:6607940/1‑68 (MQ=255) aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc > 1:780439/1‑68 (MQ=255) aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc > 1:22634685/1‑68 (MQ=255) tctGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatg > 1:2359269‑M1/1‑14 (MQ=255) tctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCaa > 1:2164345/1‑68 (MQ=255) tctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCaa > 1:40633502/1‑68 (MQ=255) tctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCaa > 1:10050290/1‑68 (MQ=255) tctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCaa > 1:27142301/1‑68 (MQ=255) tGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgac < 1:14170254‑M1/68‑57 (MQ=255) tGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgac < 1:36701947‑M1/68‑57 (MQ=255) tGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgac < 1:19692388‑M1/68‑57 (MQ=255) gTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgact < 1:7364418‑M1/68‑58 (MQ=255) GTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACg > 1:37352318‑M1/1‑68 (MQ=255) cAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgt < 1:6320415‑M1/68‑60 (MQ=255) cAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgt < 1:9252757‑M1/68‑60 (MQ=255) cAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgt < 1:12631319‑M1/68‑60 (MQ=255) cAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgt < 1:20192854‑M1/68‑60 (MQ=255) CAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTttcaaaggt < 1:15516112‑M1/67‑4 (MQ=255) CAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGt < 1:11207932‑M1/67‑1 (MQ=255) AGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGtt < 1:60879‑M1/67‑1 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgccagagtaaaacgtaatggatgcctgtgg > 1:14633871‑M1/1‑7 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggttgcctgtgg > 1:153789‑M1/1‑7 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgagtgtgg > 1:43621929‑M1/1‑7 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtgg > 1:20360367‑M1/1‑7 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtgg > 1:34596752‑M1/1‑7 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtgg > 1:25773837‑M1/1‑7 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtgg > 1:3383541‑M1/1‑7 (MQ=255) ccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactggggt > 1:41475424‑M1/1‑6 (MQ=255) CCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTGGGCCGTTTCAAACGTTCCt < 1:20685758‑M1/68‑1 (MQ=255) cgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtgg < 1:34022755‑M1/66‑62 (MQ=255) cgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtg < 1:23225533‑M1/65‑61 (MQ=255) CGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCt > 1:32049135‑M1/1‑67 (MQ=255) CGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCt > 1:35300740‑M1/1‑67 (MQ=255) gccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgc > 1:30673747‑M1/1‑4 (MQ=255) GCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCtt < 1:14999461‑M1/67‑1 (MQ=255) GCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCtt < 1:18516996‑M1/67‑1 (MQ=255) GCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCtt < 1:36922689‑M1/67‑1 (MQ=255) cgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgcgat < 1:32850371‑M1/68‑68 (MQ=255) cgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgcgat < 1:41731499‑M1/68‑68 (MQ=255) cgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgcgat < 1:38270674‑M1/68‑68 (MQ=255) | CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCAC > CP009273/4548063‑4548197 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |