New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | CP009273 | = 1427768 | NA (NA) | 3 (0.010) | 3/98 | NT | NA | coding (164/591 nt) | pinR | Rac prophage; putative site‑specific recombinase |
? | CP009273 | = 1427790 | NA (NA) | coding (142/591 nt) | pinR | Rac prophage; putative site‑specific recombinase |
TCACCACATTTCAGGCGAGCAAGCAACCGGTTAAAACCAGGACGCTCACTGGTTGCTGCTGAGCCGCTAATGTGTTCTTCG > CP009273/1427741‑1427821 | tctccacATTTCAGGCGATCAACAAACCTGTTAAACCCTGCAGGATCACTGGTTGCTGCTGAGCCGc < 1:39057031/64‑1 (MQ=0) ggagAGCAAGCAACCGGTTAAAACCAGGACGCTCAAAGGTTGCTGCTGAGCCGCTAATGTGTTCTTCg > 1:23556516/4‑68 (MQ=1) | TCACCACATTTCAGGCGAGCAAGCAACCGGTTAAAACCAGGACGCTCACTGGTTGCTGCTGAGCCGCTAATGTGTTCTTCG > CP009273/1427741‑1427821 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |