New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 1427768	NA (NA)	3 (0.010)	3/98	NT	NA	coding (164/591 nt)	pinR	Rac prophage; putative site‑specific recombinase
	?	CP009273	= 1427790	NA (NA)					coding (142/591 nt)	pinR	Rac prophage; putative site‑specific recombinase

TCACCACATTTCAGGCGAGCAAGCAACCGGTTAAAACCAGGACGCTCACTGGTTGCTGCTGAGCCGCTAATGTGTTCTTCG  >  CP009273/1427741‑1427821                            |                                                      tctccacATTTCAGGCGATCAACAAACCTGTTAAACCCTGCAGGATCACTGGTTGCTGCTGAGCCGc                <  1:39057031/64‑1 (MQ=0)              ggagAGCAAGCAACCGGTTAAAACCAGGACGCTCAAAGGTTGCTGCTGAGCCGCTAATGTGTTCTTCg  >  1:23556516/4‑68 (MQ=1)                            |                                                      TCACCACATTTCAGGCGAGCAAGCAACCGGTTAAAACCAGGACGCTCACTGGTTGCTGCTGAGCCGCTAATGTGTTCTTCG  >  CP009273/1427741‑1427821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.