| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1505831 = | 368 (0.700) | 21 (0.050) | 8/94 | NT | 6.6% | intergenic (+165/‑80) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog |
| ? | CP009273 | 1505880 = | 288 (0.650) | intergenic (+214/‑31) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog | |||||
Only 100 of 594 total aligned reads displayed.
CAGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAG > CP009273/1505764‑1505898 | cAGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:13155611/1‑68 (MQ=255) gcacacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttca < 1:23327937‑M1/1‑1 (MQ=255) aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:10986811/1‑67 (MQ=255) aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:5310048/1‑67 (MQ=255) aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:34534601/1‑67 (MQ=255) aGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCaa > 1:37418069/1‑67 (MQ=255) gACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAg > 1:38661469/1‑67 (MQ=255) gACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAg > 1:16993171/1‑67 (MQ=255) gACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAg > 1:25616017/1‑67 (MQ=255) gACGGCATAAAGCGCGGTAGCTCACAACCAGAATAAATTTTCTCAGCGGCGAAGCACTGCCTGCAAg > 1:12442792/1‑67 (MQ=255) acacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc > 1:14074195‑M1/65‑68 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtatttaattgttcAgcc < 1:30324534‑M1/4‑1 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc < 1:4889347‑M1/4‑1 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc < 1:15728453‑M1/4‑1 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc < 1:11966076‑M1/4‑1 (MQ=255) cacaggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgcc < 1:11697635‑M1/4‑1 (MQ=255) ggCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAgccgc < 1:29489003/68‑1 (MQ=255) caggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgccgcc < 1:26253283‑M1/7‑1 (MQ=255) caggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgccgcc < 1:34852551‑M1/7‑1 (MQ=255) caggctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAgccgcc < 1:9456950‑M1/7‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGccgccg < 1:38873181/67‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGccgccg < 1:1037642/67‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:9304193/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:19505986/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:18080595/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:32652936/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:1767363/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:15380563/68‑1 (MQ=255) aTAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGt < 1:27421210/68‑1 (MQ=255) gctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAGCCGCCGt < 1:42724690‑M1/9‑1 (MQ=255) gctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAGCCGCCGt < 1:17239258‑M1/9‑1 (MQ=255) gctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAGCCGCCGt < 1:26677097‑M1/9‑1 (MQ=255) gctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAGCCGCCGt < 1:3432721‑M1/9‑1 (MQ=255) gctgctgcgggcaaatgtcttgctcataaggtcttactcctgtcgtaattaattgttcAGCCGCCGt < 1:35284350‑M1/9‑1 (MQ=255) gctgctgcgggcaaatgtcttgctcataaggtcttactactgtcttaattaattgttcAGCCGCCGt < 1:24881421‑M1/9‑1 (MQ=255) aaTGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCt < 1:21058806/68‑1 (MQ=255) aTGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTa > 1:16111594/1‑68 (MQ=255) aTGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTa > 1:25060765/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg < 1:12804457/68‑1 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg < 1:23563722/68‑1 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg < 1:31488500/68‑1 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg < 1:14980218/68‑1 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg > 1:33019391/1‑68 (MQ=255) gcgcGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATg > 1:18576313/1‑68 (MQ=255) gcgGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATgg < 1:1074527/67‑1 (MQ=255) gcgGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGt < 1:43439059/68‑1 (MQ=255) gTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAATGTGTCACTGCAAGCCGCCGTCTATGGTTaa > 1:22930132/1‑68 (MQ=255) gTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTaa > 1:24527130/1‑68 (MQ=255) gTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTaa > 1:3821988/1‑68 (MQ=255) tAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTaa < 1:8115085/67‑1 (MQ=255) aGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAAc > 1:19127019/1‑68 (MQ=255) tCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAg > 1:35077562/1‑68 (MQ=255) cacaACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAgg < 1:31788171/68‑1 (MQ=255) gtcttgctcataaggtcttactcctgtcgtaattaattgttcAGCCGCCGTCTATGGGTAAACAAGga < 1:9711664‑M1/26‑1 (MQ=255) acaACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATTGTTAAACAAGga > 1:6089810/1‑68 (MQ=255) acaACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGga > 1:31000895/1‑68 (MQ=255) acaACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGga > 1:6504090/1‑68 (MQ=255) acaACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGga > 1:2047043/1‑68 (MQ=255) acaACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGga > 1:40552441/1‑68 (MQ=255) acaACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGga > 1:37910099/1‑68 (MQ=255) aaCCTGAATAAATTTTCTCAGGGGTGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGgaga < 1:8566867/68‑1 (MQ=255) aaCCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGgaga > 1:10084321/1‑68 (MQ=255) aCCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGat > 1:27818057/1‑68 (MQ=255) aCCTGAATAAATTTTCTCAGGGGCGAAGGAGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGat > 1:29942854/1‑68 (MQ=255) ccTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGata > 1:770614/1‑68 (MQ=255) ccTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGata < 1:36692998/68‑1 (MQ=255) ccTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGata > 1:37154589/1‑68 (MQ=255) ccTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGata > 1:42364857/1‑68 (MQ=255) ccTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGata > 1:28060891/1‑68 (MQ=255) gAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATAttt < 1:28526024/68‑1 (MQ=255) ttttCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggc > 1:41400283/1‑68 (MQ=255) ttttCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggc > 1:41156878/1‑68 (MQ=255) tttCTCCGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggca < 1:41808952/68‑1 (MQ=255) tttCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggca < 1:42974379/68‑1 (MQ=255) tcttactcctgtcgtaattaattgttcAGCCGCCGTCGATGGTTAAACAAGGAGATATTTTTccggc < 1:32206828‑M1/40‑1 (MQ=255) ttCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggcac > 1:39892965/1‑68 (MQ=255) tcAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTacggcacggc > 1:29119352/1‑68 (MQ=255) ccggggCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCAcggcg < 1:19824906/66‑1 (MQ=255) cAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCAcggcg < 1:26951285/68‑1 (MQ=255) cAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCAcggcg < 1:22340780/68‑1 (MQ=255) cAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCAcggcg < 1:2415335/68‑1 (MQ=255) cAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCAcggcg < 1:39593776/68‑1 (MQ=255) cAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCAcggcg < 1:16447662/68‑1 (MQ=255) tcctgtcgtaattaattgttcAGCCGCCGTCTATGGTTTAACAAGGAGATATTTTTACGGCAcggcg < 1:36226037‑M1/46‑1 (MQ=255) cGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGa < 1:2581546/67‑1 (MQ=255) cGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGa < 1:21728437/67‑1 (MQ=255) cGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGa < 1:33541396/67‑1 (MQ=255) gAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAAc > 1:20615561/1‑68 (MQ=255) cgtaattaattgttcAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAAc < 1:42043518‑M1/53‑1 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaa < 1:35804457/68‑1 (MQ=255) ggTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAAGaat > 1:20079870/1‑68 (MQ=255) ggTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat > 1:1378268/1‑68 (MQ=255) tgtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat < 1:25424444/66‑1 (MQ=255) gtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaattaa < 1:39116443/68‑1 (MQ=255) cTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTAc > 1:40189339/1‑68 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:28880050/68‑1 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:14553914/68‑1 (MQ=255) cAAGCCGCCGTCTATGGTTAATCAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGAc > 1:33871465/1‑68 (MQ=255) cAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAGTTAATTACGAc > 1:7254589/1‑68 (MQ=255) cAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGAc > 1:16000431/1‑68 (MQ=255) | CAGACGGCATAATGCGCGGTAGCTCACAACCTGAATAAATTTTCTCAGGGGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAG > CP009273/1505764‑1505898 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |