| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1823129 | 214 (0.410) | 20 (0.050) | 13/94 | NT | 9.5% | coding (863/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase |
| ? | CP009273 | = 1823150 | 200 (0.450) | coding (842/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase | |||||
Only 100 of 576 total aligned reads displayed.
CAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAAT > CP009273/1823063‑1823196 | cAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGcccc < 1:32021023/68‑1 (MQ=255)cAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGcccc < 1:13019140/68‑1 (MQ=255)cAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGcccc > 1:20013529/1‑68 (MQ=255) aGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGcccc > 1:15472300/1‑67 (MQ=255) gTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGcccc > 1:9812942/1‑66 (MQ=255) tGCCCGGCGTTACTCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCt < 1:33108907/67‑1 (MQ=255) tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt > 1:34214724/1‑68 (MQ=255) tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCtt > 1:16586403/1‑68 (MQ=255) tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCt < 1:42678696/67‑1 (MQ=255) tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCt < 1:33830208/67‑1 (MQ=255) tGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCt < 1:19180442/67‑1 (MQ=255) tGCCAGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCACGCtt > 1:18059070/1‑68 (MQ=255) gCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCttt < 1:220645/68‑1 (MQ=255) ccGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTc > 1:26026573/1‑68 (MQ=255) cGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGc < 1:10349806/67‑1 (MQ=255) gTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCaa < 1:16012600/68‑1 (MQ=255) gTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCaa < 1:25082448/68‑1 (MQ=255) gTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCaa > 1:252567/1‑68 (MQ=255) aTCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATaaa < 1:17819150/68‑1 (MQ=255) tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGGCCggcggtttttgcggaaaa > 1:41007568‑M1/1‑50 (MQ=255) tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc > 1:4186741/1‑68 (MQ=255) tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc > 1:40130667/1‑68 (MQ=255) tCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAc > 1:29709754/1‑68 (MQ=255) ggCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgg > 1:41668697‑M2/1‑66 (MQ=255) gCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgg < 1:6900571‑M2/67‑3 (MQ=255) cTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCggg > 1:22481263‑M2/1‑64 (MQ=255) tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg > 1:34608027‑M2/1‑63 (MQ=255) tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg > 1:30661941‑M2/1‑63 (MQ=255) tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg > 1:791231‑M2/1‑63 (MQ=255) tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg > 1:25593446‑M2/1‑63 (MQ=255) tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg > 1:9148228‑M2/1‑63 (MQ=255) tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg > 1:37939459‑M2/1‑63 (MQ=255) tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc > 1:35036425‑M2/1‑63 (MQ=255) tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc > 1:37840058‑M2/1‑63 (MQ=255) aCGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgca < 1:11641206‑M2/68‑8 (MQ=255) cGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgca > 1:32363742‑M2/1‑60 (MQ=255) cGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgca > 1:26728508‑M2/1‑60 (MQ=255) cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGt < 1:15022222/67‑1 (MQ=255) cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGt < 1:38512252/67‑1 (MQ=255) cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGc < 1:31170463/68‑1 (MQ=255) cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGc < 1:20667467/68‑1 (MQ=255) cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGc < 1:39359078/68‑1 (MQ=255) cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcg > 1:18901467‑M2/1‑49 (MQ=255) cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGtt < 1:15688559/67‑1 (MQ=255) cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTg > 1:12761571/1‑68 (MQ=255) cGAGCAAGAAACGCATCGCCCTGCGCCCCGATTTTCAGCAATAAACGGAGGGCGC‑AGGTGCAGCGTTg > 1:27084711/1‑68 (MQ=255) cGAGCAAGAAACGCATCGCCCTCCGCCCCGCCTTGCAGCAATAAACGGCgggcgcagggcgatgcgt > 1:8349640‑M2/1‑49 (MQ=255) aGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGa > 1:39784178/1‑67 (MQ=255) aaGAAACGCATCTCCCTGCGCCCCGCTTTTCAGCAATTAACGGCGGGCGC‑AGGTGCAGCGTTGACCgg < 1:14026189/68‑1 (MQ=255) aaGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCg > 1:14604172/1‑67 (MQ=255) agcaaCGCATCGCCCTGCGCCCCGCTGTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGc < 1:41274757/65‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATCAACGGGGGGCGC‑AGGTGCAGCGTTGACCGGc < 1:18518415/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGc < 1:42085909/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGc < 1:10997280/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGc < 1:34002532/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGc < 1:13578588/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGc < 1:21492497/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGc < 1:11990223/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGc < 1:23127813/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGc < 1:37741652/68‑1 (MQ=255) aaCGCATCGCCCTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcg > 1:4504930‑M1/1‑19 (MQ=255) aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGCtgt > 1:3627281/1‑68 (MQ=255) aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGCt < 1:36782754/66‑1 (MQ=255) cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGCTGTGa < 1:6197108/68‑1 (MQ=255) cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGCTGTGa < 1:10768418/68‑1 (MQ=255) cATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGc < 1:24162841/61‑1 (MQ=255) aTCGCCCTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctgg > 1:40428133‑M1/1‑14 (MQ=255) tCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcgtttcttgctcgtctggt > 1:42817413‑M2/1‑34 (MQ=255) tCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGCTGTGACaaa < 1:24434104/68‑1 (MQ=255) gCCCTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggtt > 1:23691717‑M1/1‑11 (MQ=255) gCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGCTGTGACaacc > 1:17253193/1‑65 (MQ=255) cccTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttg > 1:8927135‑M1/1‑10 (MQ=255) cccTGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttg > 1:32757500‑M1/1‑10 (MQ=255) cccTGCGCCCgccggttattgctgataagcggggcgcagggcgatgcgtttcttgctcgtctgggtg > 1:31546292‑M1/1‑10 (MQ=255) accTGCGCCCCGCGTTTAAGCAATAAACGGC‑TGCGCGAGGTGCAGCGTTGCCACGCGGGGACaaagg > 1:578745/2‑65 (MQ=255) aCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑CGGTGCAGCGGTGACCGGCTGTgacaaccg < 1:2793156‑M1/66‑4 (MQ=255) ccTGCGCCCgccggttattgctgaacagcgtggcgcagggcgatgcgtttcttgctcgtctggttgcc < 1:6656094‑M1/68‑60 (MQ=255) CCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGCTGTGACAAACGcc < 1:3815510‑M1/68‑1 (MQ=255) CCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGCTGTGACAAACGcc < 1:12584929‑M1/68‑1 (MQ=255) CTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGCTGTGACAAACGCCg < 1:9436132‑M1/68‑1 (MQ=255) tGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccg > 1:10177741‑M1/1‑7 (MQ=255) tGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccg > 1:7576949‑M1/1‑7 (MQ=255) tGCGCCCgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccg > 1:28470921‑M1/1‑7 (MQ=255) tGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcgtttcttgctcgtctggttgccg < 1:24786401‑M2/67‑40 (MQ=255) GCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGCTGTGACAAACGCCGAc > 1:29464718‑M1/1‑68 (MQ=255) cgcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttctttctattctggtttccgtca > 1:26467668‑M1/1‑5 (MQ=255) cgcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca > 1:34929633‑M1/1‑5 (MQ=255) cgcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca > 1:35563421‑M1/1‑5 (MQ=255) cgcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca > 1:8855460‑M1/1‑5 (MQ=255) cgcccgccgtgtattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca > 1:31785933‑M1/1‑5 (MQ=255) CGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGCTGTGACAAACGCCg < 1:11339283‑M1/65‑1 (MQ=255) gcccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtca > 1:7741875‑M1/1‑4 (MQ=255) gcCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcgtttcttgctcgtctggttgccgtcag > 1:17721580‑M2/1‑25 (MQ=255) GCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGCCCGGCTGTGACAAACGCCGACTg < 1:1757563‑M1/68‑1 (MQ=255) GCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg < 1:29056167‑M1/68‑1 (MQ=255) GCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg < 1:30396350‑M1/68‑1 (MQ=255) GCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg < 1:38913254‑M1/68‑1 (MQ=255) cccgccgtttattgctgaaaagcggggcgcagggcgatgcgtttcttgctcgtctggttgccgtcag > 1:14419387‑M1/1‑3 (MQ=255) ccccGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcgtttcttgctcgtctggttgccgtcag < 1:21610832‑M2/67‑44 (MQ=255) CCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa > 1:5047090‑M1/1‑67 (MQ=255) | CAGTTGCCCGGCGTTAATCGCTGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGC‑AGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAAT > CP009273/1823063‑1823196 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |