| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2006338 = | 496 (0.940) | 21 (0.050) | 11/92 | NT | 5.5% | coding (158/315 nt) | fliE | flagellar basal‑body component |
| ? | CP009273 | 2006392 = | 317 (0.730) | coding (104/315 nt) | fliE | flagellar basal‑body component | |||||
Only 100 of 673 total aligned reads displayed.
CATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGG > CP009273/2006271‑2006404 | tatCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCgg < 1:226772/68‑1 (MQ=255) tacaggctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCgg > 1:39007625‑M1/65‑67 (MQ=255) acaggctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGc < 1:1456030‑M1/5‑1 (MQ=255) ggTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCa > 1:6667608/1‑67 (MQ=255) ggTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAg < 1:34787261/68‑1 (MQ=255) aggctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:33128526‑M1/6‑1 (MQ=255) tcatcaCATCGTTTAACGCCACGCCGGGTGCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGc < 1:33932816/67‑1 (MQ=255) tcatcaCATCGTTTAACGCCACGACGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGc < 1:27528011/67‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgcccattagttttgcCGGGCa < 1:29484834‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:12138512‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:25019028‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:41354627‑M1/6‑1 (MQ=255) gctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa < 1:12574732‑M1/6‑1 (MQ=255) gcatcaCATCGTTTAACGCCACGCCGTGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGc < 1:16551493/66‑1 (MQ=255) ctacggcgcggagtgagcgaccgcaggaagcactgccgcaaccgaccattagttttgcCGGGCAGc > 1:22053261‑M1/59‑66 (MQ=255) ctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa > 1:23239851‑M1/59‑64 (MQ=255) ctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa > 1:25982949‑M1/59‑64 (MQ=255) ctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCa > 1:19869869‑M1/59‑64 (MQ=255) ctacggcgatgagtgcgcgtgcgcaggaatcactgccgcaaccgaccattagttttgcCGGGCAGc > 1:31657753‑M1/59‑66 (MQ=255) catcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCt < 1:41744643/67‑1 (MQ=255) catcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTg < 1:27008757/68‑1 (MQ=255) atcaCATCGTTTAAGGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:16904732/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:13314872/68‑1 (MQ=255) atcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGt < 1:20877656/68‑1 (MQ=255) tcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGtt < 1:37839745/68‑1 (MQ=255) tcaCATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGtt > 1:32298850/1‑68 (MQ=255) cacaTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGttt < 1:30328498/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:116416/68‑1 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt > 1:9152898/1‑68 (MQ=255) caTCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgt < 1:5398466/68‑1 (MQ=255) aTCGGTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTtgtg < 1:24586452/68‑1 (MQ=255) tCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTgtgt > 1:10082089/1‑68 (MQ=255) tCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTgtgt < 1:20076297/68‑1 (MQ=255) tCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGAAGCTGTTTgtgt > 1:14866992/1‑68 (MQ=255) cGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTa > 1:37435456/1‑68 (MQ=255) cGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGCTTGTGTa > 1:8948061/1‑68 (MQ=255) gTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTa > 1:36521160/1‑67 (MQ=255) gTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTa > 1:19118732/1‑67 (MQ=255) ttAACGCCTCGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:37187968/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:3688175/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:39723567/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:4360487/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:5960861/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:31401421/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:8243411/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:10653765/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:21589933/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:26689693/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:1402899/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:16337527/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:23733584/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:17958949/67‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCa < 1:42997907/68‑1 (MQ=255) ttAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCa < 1:1882360/68‑1 (MQ=255) ttAACGCCACGCAGGGTTGACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATc < 1:25433132/67‑1 (MQ=255) aaCGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACt < 1:11443413/68‑1 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:22249583/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:20545692/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:35126843/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:1927005/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:3347487/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:38695173/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:42545170/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:31996357/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:30666912/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:26457709/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:1296527/1‑68 (MQ=255) gccacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAAt > 1:28656722/1‑68 (MQ=255) cacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGc < 1:9734783/68‑1 (MQ=255) cacgccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGc < 1:2336081/68‑1 (MQ=255) gccGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGAt < 1:17689032/68‑1 (MQ=255) gTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCTATCGAgc > 1:29072352/1‑68 (MQ=255) gTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAgc > 1:40116552/1‑68 (MQ=255) gTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAgc > 1:24380360/1‑68 (MQ=255) gTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAg < 1:35444947/67‑1 (MQ=255) gTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAg < 1:30868864/67‑1 (MQ=255) gTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGAGTATCACTAATGCGATCGAgc > 1:18453686/1‑68 (MQ=255) gTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCACATGTTTGTGTAACACTAATGCGAACgcgc > 1:42211628/1‑68 (MQ=255) ccGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggc < 1:28290459/68‑1 (MQ=255) ccGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggc < 1:23976793/68‑1 (MQ=255) ccGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggc < 1:15876285/68‑1 (MQ=255) ccGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggc < 1:4633675/68‑1 (MQ=255) ctgccgcaaccgaccattagttttgcCGGGGAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggcg < 1:7878905‑M1/42‑1 (MQ=255) cGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCgcggcg > 1:11105512/1‑68 (MQ=255) gagaGTGAATTTTTCTGCCTGCGTGGGTGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGt < 1:27969769/68‑1 (MQ=255) gagaGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGt < 1:32665412/68‑1 (MQ=255) gTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCa < 1:17481753/67‑1 (MQ=255) tttttCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGc > 1:405323/1‑67 (MQ=255) tCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGGTCGAGCGCGGCGTGCAGCTGCCCGGc > 1:8023484/1‑68 (MQ=255) tCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGc < 1:35774286/68‑1 (MQ=255) tCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGc > 1:34302119/1‑68 (MQ=255) tCTGCCTGCGTGCGGGCAGCTGTGTGTGTATCACTACTGCGATCGAGCGCGGCGTGCAGCTGCCCGGc < 1:85678/68‑1 (MQ=255) gcctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaaa > 1:26274365/1‑68 (MQ=255) gcctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaaa > 1:36014075/1‑68 (MQ=255) gttttgcCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGCCGTGCAGCTGCCCGGCaaaa < 1:38295218‑M1/60‑1 (MQ=255) ctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaaaa < 1:6299070/67‑1 (MQ=255) ctgcGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCaaaa < 1:15333074/67‑1 (MQ=255) tgcgtgcgGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACt < 1:29710771/68‑1 (MQ=255) tgcCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCC‑GGCAAAACTAATg < 1:7389480‑M1/65‑1 (MQ=255) gtgcgGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAAt < 1:7065690/68‑1 (MQ=255) | CATATCGGTCATCACATCGTTTAACGCCACGCCGGGTTCACCGAGAGTGAATTTTTCTGCCTGCGTGCGGGCAGCTGTTTGTGTATCACTAATGCGATCGAGCGCGGCGTGCAGCTGCCCGGCAAAACTAATGG > CP009273/2006271‑2006404 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |