| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2691481 | 557 (1.060) | 46 (0.100) | 13/100 | NT | 8.1% | coding (429/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound |
| ? | CP009273 | = 2691501 | 544 (1.160) | coding (409/636 nt) | pgpC | phosphatidylglycerophosphatase C, membrane bound | |||||
Only 100 of 941 total aligned reads displayed.
GACCTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAG > CP009273/2691415‑2691548 | ccTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTtggctggc < 1:33032681/67‑1 (MQ=255) ccTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTtggctggc < 1:5595382/67‑1 (MQ=255) ccTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCg < 1:43146691/68‑1 (MQ=255) ccTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCg > 1:33810594/1‑68 (MQ=255) tttCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATa < 1:10693727/68‑1 (MQ=255) tCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAg < 1:26828669/68‑1 (MQ=255) cATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAAATTGGCTGGCGATAAGa < 1:6940602/68‑1 (MQ=255) aTGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGAt > 1:42790738/1‑68 (MQ=255) tGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGAtt > 1:3445219/1‑68 (MQ=255) tGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGAtt > 1:9158515/1‑68 (MQ=255) tCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTa > 1:30413178/1‑67 (MQ=255) tCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTa > 1:18883875/1‑67 (MQ=255) tCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTa > 1:4751667/1‑67 (MQ=255) tCCCAGACAACGAATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGATGGCGATAAGATTa > 1:40115012/1‑67 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:29354150/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:7483481/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:3825596/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:37993405/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:586812/1‑68 (MQ=255) aCAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCcgcg > 1:778859/1‑68 (MQ=255) aaCGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGc < 1:15955452‑M2/68‑2 (MQ=255) aCGCATCGTCAATACCCAACCACCTTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGca > 1:14587978‑M2/1‑66 (MQ=255) aCGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGca > 1:4427238‑M2/1‑66 (MQ=255) aCGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGca > 1:31867324‑M2/1‑66 (MQ=255) aCGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGca > 1:10344047‑M2/1‑66 (MQ=255) cGCATCGTCAATACCCAACCACCTTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:2609558‑M2/1‑65 (MQ=255) cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:41686441‑M2/1‑65 (MQ=255) cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:5111227‑M2/1‑65 (MQ=255) cGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag > 1:4045749‑M2/1‑65 (MQ=255) gCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagc > 1:40963940‑M2/1‑64 (MQ=255) gCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagc > 1:30930444‑M2/1‑64 (MQ=255) gCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagc > 1:31414380‑M2/1‑64 (MQ=255) gCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagc > 1:13365876‑M2/1‑64 (MQ=255) gCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcag < 1:23957868‑M2/67‑4 (MQ=255) gCATCGTCAATACCCAACCACCATAGCCACGCTGAATCTGGCTGGCGATAAGATTAACCCGCGGcagc > 1:20596354‑M2/1‑64 (MQ=255) cATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagcc < 1:35130754‑M2/68‑6 (MQ=255) cGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAgg < 1:12072302/68‑1 (MQ=255) tCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGc > 1:36120754/1‑68 (MQ=255) aTACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTa < 1:12405104/68‑1 (MQ=255) aTACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTa < 1:40702468/68‑1 (MQ=255) acccacccACCATAGCCTCGCTTAATTTGGCTGCCGATAAGATTAACCCGCGGCAGCCAGGGCGTATc > 1:6283346/1‑68 (MQ=255) aCCCAACCACCATAGCCACGCTGAATTTGGCTGccgcggggtaatcttatcgcccgccaaattcagcg > 1:39092011‑M1/1‑33 (MQ=255) aCCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATc > 1:21085028/1‑68 (MQ=255) cccAACCGCCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:8452745/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGccgcggggtaatcttatcgccagccaaattcagcgt > 1:22754321‑M1/1‑32 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:21449196/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:13887259/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:19979771/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:25778630/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:25266874/1‑68 (MQ=255) cccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:32486825/1‑68 (MQ=255) ccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGa < 1:33371901/68‑1 (MQ=255) ccAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGa < 1:20258733/68‑1 (MQ=255) cAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGaa < 1:28880695/68‑1 (MQ=255) aaCCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagccaaattcagcgtggc > 1:41584137‑M2/1‑49 (MQ=255) accaccATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAAt > 1:14938354/1‑68 (MQ=255) ccaccaTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATa > 1:21861903/1‑68 (MQ=255) caccaTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagccaaattcagcgtggctat > 1:17861846‑M2/1‑46 (MQ=255) accaTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATaa > 1:28668298/1‑67 (MQ=255) ccaTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATaaa > 1:19253571/1‑67 (MQ=255) caTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGt < 1:11785431/55‑1 (MQ=255) aTAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAAcc > 1:28260017/1‑67 (MQ=255) tAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGc < 1:10013508/68‑1 (MQ=255) aGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:42455103/1‑68 (MQ=255) aGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:9441710/1‑68 (MQ=255) aGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:14320682/1‑68 (MQ=255) gCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCt > 1:37523921/1‑67 (MQ=255) gCCACGCTGAATTTGGCTGGCGAT‑AGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTc > 1:27082782/1‑68 (MQ=255) ccACGCTGAATTTGGCTGccgcgggttaatgttatcgccagccaaattcagcgtgcctatggtgggtg > 1:6600264‑M1/1‑18 (MQ=255) ccACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTc > 1:11413029/1‑68 (MQ=255) ccACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTc > 1:12936645/1‑68 (MQ=255) ccACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTc > 1:31104373/1‑68 (MQ=255) ccACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTc > 1:15367193/1‑68 (MQ=255) ccACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTc > 1:38685351/1‑68 (MQ=255) ccACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTc > 1:1737416/1‑68 (MQ=255) cACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCa > 1:32244347/1‑68 (MQ=255) cACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCa > 1:23470651/1‑68 (MQ=255) aCGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagccaaattcagcgtggctatggtggttggg > 1:24776104‑M2/1‑36 (MQ=255) aCGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGcagccaaattcagcgtggctatggtggttggg > 1:30659178‑M2/1‑36 (MQ=255) tGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCa > 1:8698197/1‑67 (MQ=255) ttGGCTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacga > 1:14057252‑M1/1‑7 (MQ=255) ggCTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatg < 1:15113646‑M1/68‑64 (MQ=255) gctggcGATAAGATTAACCCGCGGCAGCCAGGGCGTATCg > 1:17791190/1‑40 (MQ=255) gctggcGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCg > 1:12689962/1‑68 (MQ=255) gCTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgc > 1:29932106‑M1/1‑4 (MQ=255) gCTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgc > 1:10158216‑M1/1‑4 (MQ=255) gCTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgc > 1:3474752‑M1/1‑4 (MQ=255) gCTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgc > 1:37188255‑M1/1‑4 (MQ=255) gCTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgc > 1:39598279‑M1/1‑4 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:40280742‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:19627660‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:22405032‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:36715531‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:3159137‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:2441618‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:27846399‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcg > 1:27577405‑M1/1‑3 (MQ=255) cTGccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgc < 1:16362653‑M1/67‑65 (MQ=255) tGccgcgggttaatcttatcggcagccaaattcagcgtggctatggtggttgggtattgacgatgcgt < 1:18447406‑M1/68‑67 (MQ=255) gccgcgggttaatcttatcgccagccaaattcagcgtggctatggtggttgggtattgacgatgcgtt < 1:23136127‑M1/68‑68 (MQ=255) | GACCTTTTCATGTCCCAGACAACGCATCGTCAATACCCAACCACCATAGCCACGCTGAATTTGGCTGGCGATAAGATTAACCCGCGGCAGCCAGGGCGTATCGAAATAAACCGCTTCAACCAGCGGCTGCGGAG > CP009273/2691415‑2691548 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |