| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3031308 = | 518 (0.980) | 27 (0.060) | 10/98 | NT | 7.5% | coding (158/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| ? | CP009273 | 3031324 = | 215 (0.470) | coding (142/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific | |||||
Only 100 of 877 total aligned reads displayed.
ATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGC > CP009273/3031242‑3031375 | tgcgccgtttatacgccagccggggagtacgcagtgctcaagaactggaacgcagtgttaaaggtat < 1:16354380‑M1/1‑1 (MQ=255)tgcgccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtat < 1:21209283‑M1/1‑1 (MQ=255)tgcgccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtat < 1:28066416‑M1/1‑1 (MQ=255)tgcgccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtat < 1:12648165‑M1/1‑1 (MQ=255) aatCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGtt > 1:12040154/1‑65 (MQ=255) aatCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGtt > 1:39488251/1‑65 (MQ=255) gccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtatgctg > 1:26110700‑M1/64‑68 (MQ=255) gccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtatgct < 1:17134325‑M1/4‑1 (MQ=255) gccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtatgct < 1:34791211‑M1/4‑1 (MQ=255) atCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTtgct > 1:14848013/1‑67 (MQ=255) tCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTtgctg > 1:42272899/1‑67 (MQ=255) tCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAAAGGCCTTTTCGACGCCGCTCAGTtgctg > 1:29160430/1‑67 (MQ=255) ccGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGcc > 1:36647237/1‑68 (MQ=255) ccGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGcc > 1:6569224/1‑68 (MQ=255) ccGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGcc > 1:10309215/1‑68 (MQ=255) tacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtaTGCTGCCAGGgca > 1:39856983‑M1/56‑68 (MQ=255) tCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGgc < 1:33930974/67‑1 (MQ=255) ccTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGgcag < 1:15688098/68‑1 (MQ=255) ccTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGgcag < 1:32497961/68‑1 (MQ=255) cTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGgcagc < 1:42426623/68‑1 (MQ=255) tCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCAt < 1:27098292/68‑1 (MQ=255) gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:35459520/68‑1 (MQ=255) gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:9682121/68‑1 (MQ=255) gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:33272364/68‑1 (MQ=255) gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:1009717/68‑1 (MQ=255) gAAAAGCGTTGTGAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:12399878/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:15025963/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:15543401/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:36238285/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:32681652/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:17352721/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:31943394/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt > 1:37116987/1‑68 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:30785398/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:30487292/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:38379717/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:295968/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:38656998/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:41048766/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:41953797/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:18863910/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:19329640/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:10536713/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:20852150/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:22046714/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:11075456/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:834752/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:23288890/68‑1 (MQ=255) cggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtaTGCTGCCAGGGCAGCATACCt > 1:19745639‑M1/47‑67 (MQ=255) cGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAac > 1:43569001/1‑67 (MQ=255) ggattattgtggtcggtgatttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCg > 1:43214392‑M2/31‑68 (MQ=255) aaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGtt < 1:28828453/68‑1 (MQ=255) aGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGtt > 1:5491776/1‑67 (MQ=255) ggATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTcc > 1:3157941/1‑68 (MQ=255) ggATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTcc > 1:33463804/1‑68 (MQ=255) aTCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAg > 1:9070269/1‑68 (MQ=255) aTCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAg > 1:21789953/1‑68 (MQ=255) aTCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAg > 1:4556649/1‑68 (MQ=255) aTCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAg > 1:25851781/1‑68 (MQ=255) ctcAACGGCCGTTTCGACGCCGCTCAGTTGCTGCCAGGTCAGCATACCTTTAACACTGCGTTCCAGtt < 1:23561648/68‑1 (MQ=255) ggtcggtgatttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt > 1:36881208‑M2/21‑68 (MQ=255) ggtcggtgatttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt > 1:34515427‑M2/21‑68 (MQ=255) cAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGTGTTCCAGTTCt < 1:879933/68‑1 (MQ=255) cAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt < 1:30166881/68‑1 (MQ=255) cAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt < 1:7583936/68‑1 (MQ=255) aaCGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCtt > 1:248435/1‑68 (MQ=255) aCGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCATTCCAGTTCtt > 1:11378959/1‑67 (MQ=255) gCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTgcgc > 1:23803952/1‑68 (MQ=255) cTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCa < 1:42864330/67‑1 (MQ=255) cTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCAc < 1:2261952/68‑1 (MQ=255) ttttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACt < 1:24167784/68‑1 (MQ=255) ttttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACt < 1:6375293/68‑1 (MQ=255) tttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:3230691‑M2/57‑1 (MQ=255) tttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:26690056‑M2/57‑1 (MQ=255) tttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:1844227‑M2/57‑1 (MQ=255) tttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:28412160‑M2/57‑1 (MQ=255) ttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:14540851‑M2/58‑1 (MQ=255) ttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:17739791‑M2/58‑1 (MQ=255) tcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCg < 1:20300428‑M2/59‑1 (MQ=255) tcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCg < 1:27838037‑M2/59‑1 (MQ=255) tcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCg < 1:13233159‑M2/59‑1 (MQ=255) acgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGt > 1:27280395‑M2/7‑66 (MQ=255) acgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGt > 1:16570022‑M2/7‑66 (MQ=255) cgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt < 1:34272787‑M2/63‑1 (MQ=255) cgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt < 1:37954112‑M2/63‑1 (MQ=255) cgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt < 1:37466234‑M2/63‑1 (MQ=255) gccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt > 1:40776099‑M2/5‑67 (MQ=255) gccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt > 1:2526501‑M2/5‑67 (MQ=255) ggtaTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc > 1:40358187‑M1/5‑56 (MQ=255) gtaTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCg < 1:4945924‑M1/62‑1 (MQ=255) gtaTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCg < 1:7218630‑M1/62‑1 (MQ=255) gTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTg > 1:39148437/1‑68 (MQ=255) TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTgg > 1:13458458‑M1/1‑67 (MQ=255) TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTgg > 1:14006020‑M1/1‑67 (MQ=255) TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGc < 1:6123526‑M1/68‑1 (MQ=255) TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGc < 1:7985822‑M1/68‑1 (MQ=255) TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGc < 1:35853576‑M1/68‑1 (MQ=255) TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGc < 1:3517314‑M1/68‑1 (MQ=255) TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGc > 1:20588446‑M1/1‑68 (MQ=255) TGCTGCCAGGGCAGCATACCTATAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGc < 1:31240865‑M1/68‑1 (MQ=255) | ATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGC > CP009273/3031242‑3031375 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |