New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3832491 =486 (0.920)21 (0.050) 6/96 NT 6.3% coding (884/924 nt) yicL EamA family inner membrane putative transporter
?CP009273 3832524 = 210 (0.470)coding (917/924 nt) yicL EamA family inner membrane putative transporter

Only 100 of 426 total aligned reads displayed.

TCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGACTTC  >  CP009273/3832457‑3832591
                                                                   |                                                                   
tCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCa                                                                     >  1:4038328/1‑68 (MQ=255)
 cATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCAt                                                                    >  1:29673209/1‑68 (MQ=255)
  aTCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATa                                                                   <  1:22432106/68‑1 (MQ=255)
  aTCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATa                                                                   <  1:25204505/68‑1 (MQ=255)
  aTCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATa                                                                   <  1:23368373/68‑1 (MQ=255)
   tCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATaa                                                                  <  1:25968434/68‑1 (MQ=255)
   tCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATaa                                                                  <  1:2210027/68‑1 (MQ=255)
    cGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAg                                                                 >  1:16821841/1‑68 (MQ=255)
    cGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAg                                                                 >  1:16478211/1‑68 (MQ=255)
    cGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAg                                                                 <  1:23160545/68‑1 (MQ=255)
    cGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAg                                                                 <  1:14255140/68‑1 (MQ=255)
     gcggtgcctggctggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAg                                                                 <  1:18601698‑M2/5‑1 (MQ=255)
     gcggtgcctggctggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAg                                                                 <  1:13548827‑M2/5‑1 (MQ=255)
     gcggtgcctggctggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGt                                                                <  1:11993261‑M2/6‑1 (MQ=255)
      gTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTg                                                               >  1:34242119/1‑68 (MQ=255)
      gTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTg                                                               >  1:2544368/1‑68 (MQ=255)
        gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag                                                             <  1:15142601/68‑1 (MQ=255)
        gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag                                                             <  1:26946125/68‑1 (MQ=255)
        gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag                                                             <  1:11223820/68‑1 (MQ=255)
        gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag                                                             <  1:19321426/68‑1 (MQ=255)
        gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag                                                             <  1:38388706/68‑1 (MQ=255)
        gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag                                                             <  1:18394487/68‑1 (MQ=255)
        gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTga                                                              <  1:40148831/67‑1 (MQ=255)
        gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTga                                                              <  1:31280289/67‑1 (MQ=255)
        gattttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCCGCGCGGCATAAGTgag                                                             <  1:9087249/68‑1 (MQ=255)
         tgcctggctggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcAtgagtgag                                                             <  1:21967187‑M2/9‑1 (MQ=255)
         tgcctggctggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTgag                                                             <  1:3903135‑M2/9‑1 (MQ=255)
         tgcctggctggtaattctcacttatgccgcgccggacgatttatttttctggcgcggcATAAGTgag                                                             <  1:3589129‑M2/9‑1 (MQ=255)
         attttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTgag                                                             <  1:32695586/67‑1 (MQ=255)
            ttgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAAtt                                                         <  1:22938877/68‑1 (MQ=255)
             tgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAAtt                                                         >  1:39270157/1‑67 (MQ=255)
             tgatttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAAtt                                                         >  1:32946652/1‑67 (MQ=255)
               gctggtaattctcacttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCAGAAGTGCGGATTAcc                                                      <  1:10814241‑M1/49‑1 (MQ=255)
               atttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAcc                                                      >  1:11467400/1‑68 (MQ=255)
                tttCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAcca                                                     <  1:33540026/68‑1 (MQ=255)
                  tctaTGTATTCCCGTCGCCGCGCCATAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAcca                                                     <  1:3992675/63‑1 (MQ=255)
                  tCACTGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:5760472/68‑1 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:30865100/68‑1 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:21698479/68‑1 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:28200711/68‑1 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:20385086/68‑1 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:33394159/68‑1 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:5574790/68‑1 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:42231693/68‑1 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:13103792/68‑1 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:3671819/68‑1 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:13466258/68‑1 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:1449983/68‑1 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:36375875/68‑1 (MQ=255)
                  tCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagc                                                   <  1:15564322/68‑1 (MQ=255)
                  ggtaattctcccttatgccgcgccggacgatttatttttctggcgcggcATAAGTGAGAATTAccagc                                                   <  1:38039567‑M2/19‑1 (MQ=255)
                  ggtaaatctcactaatgccgcgccggacgatttatttatcagccgcggcATAAGTGAGAATTAccagc                                                   <  1:10339229‑M2/19‑1 (MQ=255)
                      tGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagccagt                                               <  1:7558442/68‑2 (MQ=255)
                      tGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagccagt                                               <  1:2121499/68‑2 (MQ=255)
                       ggATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGc                                              >  1:37710250/1‑68 (MQ=255)
                         ctcacttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCCGGCa                                             <  1:33760844‑M1/58‑1 (MQ=255)
                         ctcacttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCa                                             <  1:23902972‑M1/58‑1 (MQ=255)
                         aTTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTAccagccagtcc                                             <  1:34972322/67‑4 (MQ=255)
                          ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCCGGCAcc                                           >  1:3473661/1‑68 (MQ=255)
                          ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc                                           <  1:43649069/68‑1 (MQ=255)
                          ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc                                           >  1:42404790/1‑68 (MQ=255)
                          ttCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCAcc                                           <  1:9283269/68‑1 (MQ=255)
                            cccGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgc                                         <  1:41126383/68‑1 (MQ=255)
                            cccGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgc                                         >  1:24962436/1‑68 (MQ=255)
                            cccGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgc                                         <  1:8029194/68‑1 (MQ=255)
                             cttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgc                                         <  1:30601526‑M1/62‑1 (MQ=255)
                             cttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgc                                         <  1:12350088‑M1/62‑1 (MQ=255)
                             cttatGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgc                                         <  1:14092014‑M1/62‑1 (MQ=255)
                              cGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgcg                                        >  1:35348960/1‑67 (MQ=255)
                              cGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACcgcg                                        >  1:18044842/1‑67 (MQ=255)
                                 cgccgcGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAc                                    <  1:26282099/68‑1 (MQ=255)
                                  GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAcc                                   <  1:6554914‑M1/68‑1 (MQ=255)
                                  GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAcc                                   >  1:42828624‑M1/1‑68 (MQ=255)
                                  GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAcc                                   <  1:28038965‑M1/68‑1 (MQ=255)
                                  GCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAcc                                   <  1:10002373‑M1/68‑1 (MQ=255)
                                  GCCGCGCCACAAAAAAAAATCGGCCGGCGGGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCAc                                    >  1:31817196‑M1/1‑67 (MQ=255)
                                    CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCg                                  >  1:33795327‑M1/1‑67 (MQ=255)
                                    CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCg                                  >  1:16353131‑M1/1‑67 (MQ=255)
                                    CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCg                                  >  1:24435057‑M1/1‑67 (MQ=255)
                                    CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGt                                 <  1:19158498‑M1/68‑1 (MQ=255)
                                    CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGt                                 >  1:7131286‑M1/1‑68 (MQ=255)
                                    CGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGt                                 >  1:3734592‑M1/1‑68 (MQ=255)
                                             aaaaTAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATgg                        >  1:41780570/1‑68 (MQ=255)
                                              aaataaatCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGt                       <  1:20018500/68‑1 (MQ=255)
                                                 taaatCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTc                    <  1:27373964/68‑1 (MQ=255)
                                                  aaatCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGtt                      >  1:17183581/1‑65 (MQ=255)
                                                    atCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTg                  >  1:41475002/1‑67 (MQ=255)
                                                    atCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTg                  >  1:29009446/1‑67 (MQ=255)
                                                    atCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTg                  >  1:461347/1‑67 (MQ=255)
                                                    atCGTCCGGCGCGGCATAAGTGAGAATTACAAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTg                  >  1:15941390/1‑67 (MQ=255)
                                                      cGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCg               <  1:951914/68‑1 (MQ=255)
                                                      cGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCg               <  1:43179259/68‑1 (MQ=255)
                                                        tCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCt             >  1:7392061/1‑68 (MQ=255)
                                                         ccGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTAAAAAATGGTTTCTGCCGCtt            <  1:38857548/68‑1 (MQ=255)
                                                              gcggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCg       >  1:12682812‑M2/6‑68 (MQ=255)
                                                                ggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGa      <  1:8443310‑M2/64‑1 (MQ=255)
                                                                ggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGa      <  1:36812637‑M2/64‑1 (MQ=255)
                                                                ggcATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGAc     <  1:30443232‑M2/65‑1 (MQ=255)
                                                                  cATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGACt    <  1:20547406‑M2/66‑1 (MQ=255)
                                                                   aTAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGACTTc  >  1:11826033/1‑68 (MQ=255)
                                                                   |                                                                   
TCATCGGTGATTTTGATTTCAATGGATTCCCGTCGCCGCGCCAGAAAAATAAATCGTCCGGCGCGGCATAAGTGAGAATTACCAGCCAGGCACCGCGCCACCGTTAAAAATGGTTTCTGCCGCTTTAGCGACTTC  >  CP009273/3832457‑3832591

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.