| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 253 | 407 (0.770) | 24 (0.060) | 15/92 | NT | 5.6% | coding (64/66 nt) | thrL | thr operon leader peptide |
| ? | CP009273 | = 278 | 481 (1.110) | intergenic (+23/‑59) | thrL/thrA | thr operon leader peptide/Bifunctional aspartokinase/homoserine dehydrogenase 1 | |||||
Only 100 of 848 total aligned reads displayed.
TACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAGTGT > CP009273/213‑346 | tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag > 1:34125654‑M2/1‑66 (MQ=255)tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag > 1:25928563‑M2/1‑66 (MQ=255)tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAag > 1:80175‑M2/1‑66 (MQ=255)tACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAa < 1:37635635‑M2/67‑2 (MQ=255) accaccaccATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagc > 1:42162106‑M2/1‑65 (MQ=255) accaccaccATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagc > 1:16359819‑M2/1‑65 (MQ=255) ccaccaccaTCACTATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagc < 1:4603752‑M2/67‑4 (MQ=255) ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagc < 1:2723214‑M2/67‑4 (MQ=255) ccaccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagc < 1:38972868‑M2/67‑4 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:14057869‑M2/68‑6 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:27553925‑M2/68‑6 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:26853279‑M2/68‑6 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:14819934‑M2/68‑6 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:26343987‑M2/68‑6 (MQ=255) caccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:11788175‑M2/68‑6 (MQ=255) accaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagccc < 1:2268868‑M2/67‑6 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:16871512‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:21828771‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:17874639‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:30541530‑M2/1‑61 (MQ=255) ccaccaTCACCATTACCACAGCTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc > 1:40210634‑M2/1‑61 (MQ=255) caccatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca > 1:7503286‑M2/1‑60 (MQ=255) caccatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca > 1:23815718‑M2/1‑60 (MQ=255) caccatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgc < 1:31142027‑M2/67‑8 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcac > 1:6008755‑M2/1‑59 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcac > 1:4996254‑M2/1‑59 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcac > 1:9588810‑M2/1‑59 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca < 1:14386885‑M2/67‑9 (MQ=255) accatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgca < 1:25262558‑M2/67‑9 (MQ=255) ccatcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAagcccgcacc > 1:5535885‑M2/1‑58 (MQ=255) catcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCt < 1:39754322/68‑1 (MQ=255) atcaccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTg < 1:1719990/68‑1 (MQ=255) caccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGAc > 1:35702127/1‑68 (MQ=255) ccatTACCACAGGTAACGGTGCGGGCTGACGCTTACAGGAAACACAGAAAAAAGCCCGCACCTGACAg > 1:21531620/1‑68 (MQ=255) ccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAg > 1:34940269/1‑68 (MQ=255) ccatTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAg > 1:15500359/1‑68 (MQ=255) catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGt > 1:28461360/1‑68 (MQ=255) catTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGt > 1:36240516/1‑68 (MQ=255) atTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGt > 1:33384836/1‑67 (MQ=255) aCCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:15716458/1‑68 (MQ=255) aCCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:41041734/1‑68 (MQ=255) aCCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:36567669/1‑68 (MQ=255) ccACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCggg < 1:900745/68‑1 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACTCAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:373260/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:32765603/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:13286170/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:12680047/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:26574789/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:41770489/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:1009616/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:34517216/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCgg > 1:235111/1‑66 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGc < 1:2321086/68‑1 (MQ=255) cacaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGc > 1:6549064/1‑68 (MQ=255) acaGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑t > 1:42592949/1‑68 (MQ=255) tAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑tttttt > 1:40630363/1‑68 (MQ=255) tAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑tttttt > 1:16137158/1‑68 (MQ=255) tcaggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑ttttttt > 1:19552515/4‑68 (MQ=255) cGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑tttttttt > 1:12053899/1‑67 (MQ=255) cGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑tttttttt > 1:21122910/1‑67 (MQ=255) cGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑tttttttt > 1:24690987/1‑67 (MQ=255) cGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑tttttttt > 1:4192455/1‑67 (MQ=255) cGGTGCGGGCTGACGCGTACAGGAAACACACAAAAAAGCCCGCACCTGAAAGTGCGGGC‑tttttttt > 1:20582995/1‑67 (MQ=39) cGGTGCGGGCTGACGCGAACAGCAAACACAGAAAAAcccccgcaccgttacctgtggtaatggtgatg > 1:8360308‑M2/1‑36 (MQ=255) ggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑ttttttttgc > 1:10305717/1‑66 (MQ=255) ggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTc > 1:33874220/1‑68 (MQ=255) ggTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTc > 1:28028465/1‑68 (MQ=255) gCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCaaa > 1:33086207/1‑68 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCaaa < 1:18743916/67‑1 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCaaa < 1:42838735/67‑1 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAg > 1:10818322/1‑68 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAg > 1:29818824/1‑68 (MQ=255) cTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAg > 1:38636298/1‑68 (MQ=255) tGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAgg < 1:19918570/68‑1 (MQ=255) gACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGt < 1:28243832/68‑1 (MQ=255) gACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGt < 1:22499627/68‑1 (MQ=255) cgcgTACAGGAAACACAGAAAAAagcccgcaccgttacctgtggtaatggtgatggtggtggtaatg > 1:17628966‑M2/1‑23 (MQ=255) gcgTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAAc < 1:31900538/68‑1 (MQ=255) acacGAAACACAGAAAAAcgcccgcaccgttacctgtggtaatggtgatggtggtggtaatggtggt > 1:3829077‑M2/1‑18 (MQ=255) aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAgg < 1:31399247/68‑1 (MQ=255) aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAgg < 1:7234253/68‑1 (MQ=255) aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAgg < 1:41538892/68‑1 (MQ=255) aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAgg < 1:24991274/68‑1 (MQ=255) aCAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAg < 1:6362440/67‑1 (MQ=255) ggAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTa > 1:20060471/1‑67 (MQ=255) aaaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGCTTTTTTTTTTCGACCAAAGGAAACGAGGTaac > 1:28921117/1‑68 (MQ=38) aaaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGt < 1:29530896/64‑1 (MQ=255) aaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTaacaa < 1:36914985/68‑1 (MQ=255) aaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTaaca < 1:2425538/67‑1 (MQ=255) aaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTaaca < 1:6821367/67‑1 (MQ=255) aaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTaaca < 1:15079949/67‑1 (MQ=255) aaCACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTaaca < 1:883172/67‑1 (MQ=255) aaCACAGAAAAAACCCCGCACCTGAGTGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTaaca < 1:20337649/67‑1 (MQ=255) cacaGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAAcc > 1:32284203/1‑68 (MQ=255) cacaGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAAcc > 1:11389847/1‑68 (MQ=255) cacaGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAAcc > 1:35506076/1‑68 (MQ=255) aaaaaGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATg < 1:4367387/65‑1 (MQ=255) aaaaaGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCg < 1:19070590/67‑1 (MQ=255) aaaaaGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCg < 1:1827346/67‑1 (MQ=255) aaaGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAgt < 1:12256328/68‑1 (MQ=255) | TACCACCACCATCACCATTACCACAGGTAACGGTGCGGGCTGACGCGTACAGGAAACACAGAAAAAAGCCCGCACCTGACAGTGCGGGC‑TTTTTTTTTCGACCAAAGGTAACGAGGTAACAACCATGCGAGTGT > CP009273/213‑346 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |