| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 360096 | 474 (0.900) | 3686 (7.130) | 36/110 | NT | 87.8% | intergenic (‑30/+565) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3508417 = | 555 (1.070) | coding (2/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase | |||||
Only 100 of 4797 total aligned reads displayed.
TGCGGTATCTTCACCCAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGT > CP009273/3508350‑3508484 | ggTATCTTCACCCAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATcc > 1:7276914/1‑68 (MQ=255) cccAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCtt > 1:16912428/1‑68 (MQ=255) cccAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCtt > 1:15238398/1‑68 (MQ=255) ggCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTgaga > 1:35331575/1‑68 (MQ=255) cGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCggg < 1:36086066/68‑1 (MQ=255) gtgataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAAc > 1:9580953‑M2/29‑68 (MQ=255) gtgataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAAc > 1:31018031‑M2/29‑68 (MQ=255) gtgataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTAGCGGGTGAAAc > 1:2303590‑M2/29‑68 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:13329539‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:22597929‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:24651337‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:2582680‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:28791265‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:30322127‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:19370765‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:31420648‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:8315023‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:7966866‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:5320382‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:39316279‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:14618428‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACg > 1:4914113‑M2/27‑67 (MQ=255) gataagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGa < 1:34098150‑M2/42‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGAc > 1:9169234‑M2/25‑67 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGAc > 1:34955604‑M2/25‑67 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGAc > 1:34519887‑M2/25‑67 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGAc > 1:42080431‑M2/25‑67 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:38282716‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:38549394‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:29932420‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:29546372‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:42945521‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:21332855‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:17758622‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCTTCTCCCTGAGAATTCTTTTTTCGCGGGTGAAACGACt < 1:18572845‑M2/44‑1 (MQ=255) taagctgtcaaacatgagaattccATCCGCGTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:12561097‑M2/44‑1 (MQ=255) gAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt < 1:36746491/68‑1 (MQ=255) aagctgtcaaacatgagaattccATCCGCTTCTCCTTGAGGATTATTTTTTCGCGGGTGAAACGACt > 1:32963176‑M2/24‑67 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAatta > 1:10402784‑M2/22‑43 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:18926070‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:16473947‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:18185075‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:35783422‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:22137015‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:37919322‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:40523400‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:4341754‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:4505025‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:5614842‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:12110005‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:10795559‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:26636122‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:20143323‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:2784629‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:20865345‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:28522629‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACt > 1:26230865‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTATATCGCGGGTGAAACGACt > 1:36367758‑M2/22‑65 (MQ=255) gctgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTAATTTTTCGCGGGTGAAACGACt > 1:41710338‑M2/22‑65 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:24962699‑M2/49‑1 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg > 1:40916541‑M2/20‑68 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:15596493‑M2/49‑1 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:41353088‑M2/49‑1 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:37521187‑M2/49‑1 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:14212374‑M2/49‑1 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg > 1:33341483‑M2/20‑68 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:2054731‑M2/49‑1 (MQ=255) tgtcaaacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:23350315‑M2/49‑1 (MQ=255) gCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:7568225/67‑1 (MQ=255) gCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTgg < 1:31772126/67‑1 (MQ=255) tCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt < 1:42517511/68‑1 (MQ=255) tCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt < 1:6884380/68‑1 (MQ=255) aacattagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt < 1:11657381‑M2/54‑1 (MQ=255) aacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt < 1:14895837‑M2/54‑1 (MQ=255) aacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt < 1:21718671‑M2/54‑1 (MQ=255) aacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt > 1:6058020‑M2/15‑68 (MQ=255) aacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt > 1:11189948‑M2/15‑68 (MQ=255) aacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt < 1:16058327‑M2/54‑1 (MQ=255) aacatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt < 1:27041310‑M2/54‑1 (MQ=255) acatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGt > 1:37155988‑M2/14‑67 (MQ=255) acatgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTa < 1:32119212‑M2/55‑1 (MQ=255) atgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACa > 1:39752113‑M2/12‑68 (MQ=255) atgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACa > 1:13836311‑M2/12‑68 (MQ=255) tgagaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaa < 1:28196295‑M2/58‑1 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:30671665/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:24221898/1‑67 (MQ=255) aCTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACaaa > 1:38983917/1‑67 (MQ=255) gaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAg < 1:25411358‑M2/60‑1 (MQ=255) gaattccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAg < 1:32496267‑M2/60‑1 (MQ=255) tGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGcc > 1:19701536/1‑68 (MQ=255) attccATCCGCTTCTCCTTTAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGc < 1:27447489‑M2/61‑1 (MQ=255) attccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGc < 1:23728555‑M2/61‑1 (MQ=255) tccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagc > 1:17340451‑M2/4‑68 (MQ=255) tccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagc > 1:291768‑M2/4‑68 (MQ=255) tccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagc > 1:33695508‑M2/4‑68 (MQ=255) ccATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCcagca < 1:6456206‑M2/66‑1 (MQ=255) aTCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGt > 1:12925250/1‑68 (MQ=255) aTCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGt > 1:10002424/1‑68 (MQ=255) aTCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGt > 1:872408/1‑68 (MQ=255) aTCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGt > 1:4015553/1‑68 (MQ=255) | TGCGGTATCTTCACCCAGGCGGGCAAAATCAGCCGACAGAATTGAGGGGGCAATCAAATACTGTTTCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAGT > CP009273/3508350‑3508484 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |