New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360168 =	NA (NA)	90 (0.200)	11/94	NT	NA	intergenic (‑102/+493)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	360191 =	NA (NA)					intergenic (‑125/+470)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTC  >  CP009273/360162‑360245                              |                                                       aaagTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaa                  >  1:32371457/4‑68 (MQ=1)          atgcGCTGCCGGCTGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAgg         <  1:3402098/65‑1 (MQ=1)                 ccgggcggATTTGTCCTACTGAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTc  <  1:40022437/65‑1 (MQ=0)                 ccgggcggATTTGTCCTACACAGGAGAGCGTTCCCCGACAAACATCAGATAAAACGAAAGGCCCAGTc  <  1:27973719/65‑1 (MQ=1)                 ccgggcggATTTGTCCTAATCTGCAGAGATTTAACCGACACCCAACATATAAAACGAAAGGCTCAGTc  <  1:120446/65‑1 (MQ=0)                 ccaggcggATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTc  <  1:41951495/65‑1 (MQ=1)                              |                                                       AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTC  >  CP009273/360162‑360245

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.