| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 370386 = | NA (NA) | 5 (0.010) | 3/98 | NT | NA | noncoding (1/436 nt) | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences |
| ? | CP009273 | 370416 = | NA (NA) | noncoding (31/436 nt) | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences | REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences | |||||
Only 100 of 652 total aligned reads displayed.
GAGAACGTGCATTTTGTATGCCCATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACG > CP009273/370349‑370483 | aaCGTGCATTTTGTATGCCCATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAc > 1:10303977/1‑68 (MQ=255) aCGTGCATTTTGTATGCCCATCCCAGCACGACTGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACg > 1:26799828/1‑68 (MQ=255) aCGTGCATTTTGTATGCCCATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACg > 1:5127912/1‑68 (MQ=255) aCGTGCATTTTGTATGCCCATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACg > 1:38996987/1‑68 (MQ=255) aCGTGCATTTTGTATGCCCATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACg > 1:2278470/1‑68 (MQ=255) aCGTGCATTTTGTATGCCCATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACg < 1:15185854/68‑1 (MQ=255) aCGTGCATTTTGTATGCCCAACCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACg > 1:967998/1‑68 (MQ=255) acctacaaattctcacgccatccgtaggccggataaggcgttcacgccgcatccggcCTACGGATGGc < 1:3930170‑M2/11‑1 (MQ=255) aTTTTGTATGCCCATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGc < 1:1795353/68‑1 (MQ=255) aTTTTGTATGCCCATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGc > 1:13297502/1‑68 (MQ=255) aTTTTGTATGCCCATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGc < 1:32480198/68‑1 (MQ=255) tttGTATGCCCATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGt > 1:31600622/1‑68 (MQ=255) gTATGCCCATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTgag < 1:3373560/68‑1 (MQ=255) aTGCCCATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGaa < 1:8282257/68‑1 (MQ=255) aTGCCCATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGaa < 1:28727768/68‑1 (MQ=255) aTGCCCATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGaa < 1:21145682/68‑1 (MQ=255) tGCCCATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAAt < 1:10017023/68‑1 (MQ=255) cccATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAAttt > 1:30717733/1‑68 (MQ=255) cccATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAAttt > 1:29306848/1‑68 (MQ=255) cccATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAAttt > 1:9098543/1‑68 (MQ=255) cccATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAAttt > 1:27150874/1‑68 (MQ=255) cccATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAAttt > 1:3569035/1‑68 (MQ=255) cccATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAAttt > 1:214233/1‑68 (MQ=255) cccATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAAgtt > 1:41311465/1‑68 (MQ=11) ccATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAAttt < 1:28251219/67‑1 (MQ=255) ccATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAAttt < 1:38622126/67‑1 (MQ=255) ccATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAAttt < 1:12091658/67‑1 (MQ=255) ccATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAAttt < 1:7266275/67‑1 (MQ=255) ccAACCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAAttt < 1:10656066/67‑1 (MQ=255) cccAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAgg < 1:21621604/68‑1 (MQ=255) cccAGCACGACTGCCGGATGCGGCGGGATGGCCTTATCCGGCCTTCGGATGGCGTGAGAATTTGTAgg < 1:32139194/68‑1 (MQ=17) ccAGCACGTCTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGt < 1:14507499/68‑1 (MQ=255) ccAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAgg > 1:37457764/1‑67 (MQ=255) ccAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAgg > 1:24370852/1‑67 (MQ=255) ccAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAgg > 1:34819678/1‑67 (MQ=255) ccAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAgg > 1:25186393/1‑67 (MQ=255) ccAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAgg > 1:34208642/1‑67 (MQ=255) ccAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGt < 1:1595919/68‑1 (MQ=255) ccAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGt < 1:15689584/68‑1 (MQ=255) ccAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGt < 1:6065911/68‑1 (MQ=255) ccAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGt < 1:42372986/68‑1 (MQ=255) ccAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGt < 1:42648470/68‑1 (MQ=255) gcgCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAgg > 1:22480469/3‑66 (MQ=37) gcgCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAgg > 1:29714357/3‑66 (MQ=9) cAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTc < 1:19534118/68‑1 (MQ=255) gCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTg > 1:25650809/1‑68 (MQ=255) gCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTg > 1:7133362/1‑68 (MQ=255) aCGACTGCCGGATGCGGCGTGAACGCCTTATGCTGCCGAGGGAGGGCGAGAGAATTAGTAGTTCTGAt > 1:4733683/1‑68 (MQ=14) aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCt < 1:11784357/65‑1 (MQ=255) aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGa < 1:3958287/67‑1 (MQ=255) aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGa < 1:12498440/67‑1 (MQ=255) aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGAt > 1:6930752/1‑68 (MQ=255) aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGAt > 1:17219359/1‑68 (MQ=255) aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGAt > 1:2772950/1‑68 (MQ=255) aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGAt > 1:184204/1‑68 (MQ=255) aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGAt > 1:32856545/1‑68 (MQ=255) aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGAt > 1:9262207/1‑68 (MQ=255) aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGAt > 1:421714/1‑68 (MQ=255) aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGAt > 1:2614433/1‑68 (MQ=255) aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGAt > 1:34404606/1‑68 (MQ=255) aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGAt > 1:23804739/1‑68 (MQ=255) aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGGGAGAATTTGTAGGTCTGa < 1:16643599/67‑1 (MQ=255) aCTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAg > 1:31279398/1‑68 (MQ=255) tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGAc > 1:20725135/1‑68 (MQ=255) GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGAcg > 1:13846514‑M1/1‑68 (MQ=255) CCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGAcgc < 1:275607‑M1/68‑1 (MQ=255) CGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGAcgcg > 1:21911669‑M1/1‑68 (MQ=255) CGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGAcgcg > 1:444100‑M1/1‑68 (MQ=255) CGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGAcgcg > 1:35985395‑M1/1‑68 (MQ=255) CGGATGCGGAGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGAcgcg > 1:19876606‑M1/1‑68 (MQ=255) GATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGtt < 1:11486634‑M1/68‑1 (MQ=255) gcggcgTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGc < 1:23336861/68‑1 (MQ=255) gcggcgTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGc > 1:247240/1‑68 (MQ=255) gcggcgTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGc > 1:19121292/1‑68 (MQ=255) gcggcgTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGc > 1:11150777/1‑68 (MQ=255) gcggcgTGAACGCCTTATCCGGCCGACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGc > 1:38013669/1‑68 (MQ=255) ggcgTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCg < 1:31846701/67‑1 (MQ=255) gTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGC < 1:14849800‑M1/68‑1 (MQ=255) gAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCA < 1:11048684‑M1/67‑1 (MQ=255) gAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCA < 1:4056705‑M1/67‑1 (MQ=255) gAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCA < 1:36404395‑M1/67‑1 (MQ=255) gAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCA > 1:20245705‑M1/1‑67 (MQ=255) gAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCA < 1:43027703‑M1/67‑1 (MQ=255) aCGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATC < 1:4097689‑M1/67‑1 (MQ=255) cGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAg > 1:43216124/1‑68 (MQ=255) ccTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGc > 1:35511402/1‑68 (MQ=255) ccTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGc > 1:5367497/1‑68 (MQ=255) ccTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGc > 1:5741916/1‑68 (MQ=255) ccTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGc > 1:37071703/1‑68 (MQ=255) cTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGc < 1:40122193/67‑1 (MQ=255) tccggcCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCt > 1:31028912‑M2/7‑67 (MQ=255) ccggcCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTgc < 1:17541333‑M2/63‑1 (MQ=255) ccggcCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTgc < 1:39745497‑M2/63‑1 (MQ=255) ccggcCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTgc < 1:12950824‑M2/63‑1 (MQ=255) ccGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCcggcagtcgt < 1:8618607‑M1/68‑11 (MQ=255) cggcCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTgc > 1:7564489‑M2/5‑67 (MQ=255) cTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACg < 1:6343002/68‑1 (MQ=255) cTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACg < 1:38342035/68‑1 (MQ=255) cTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACg < 1:24084100/68‑1 (MQ=255) cTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACg < 1:3318359/68‑1 (MQ=255) | GAGAACGTGCATTTTGTATGCCCATCCCAGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACG > CP009273/370349‑370483 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |