| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 694881 = | NA (NA) | 15 (0.030) | 5/98 | NT | NA | noncoding (1/98 nt) | RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | 4127747 = | NA (NA) | noncoding (31/98 nt) | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP307 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
Only 100 of 837 total aligned reads displayed.
GAACAACGTGGGAGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGC > CP009273/4127681‑4127814 | gaagaaCGTGGGAGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCt < 1:34098716/68‑1 (MQ=255)gAACAACGTGGGAGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCt < 1:39748865/68‑1 (MQ=255)gAACAACGTGGGAGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCt < 1:14332235/68‑1 (MQ=255)gAACAACGTGGGAGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCt < 1:19221425/68‑1 (MQ=255) acaacGTGGGAGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTa < 1:32446918/67‑1 (MQ=255) acaacGTGGGAGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTAc > 1:5066255/1‑68 (MQ=255) acaacGTGGGAGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTAc > 1:20626606/1‑68 (MQ=255) acaacGTGGGAGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTAc > 1:37180897/1‑68 (MQ=255) aacGTGGGAGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACaa > 1:17428652/1‑68 (MQ=255) aGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACg < 1:2560516/67‑1 (MQ=255) aGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGc > 1:27196214/1‑68 (MQ=255) aGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGc > 1:36187784/1‑68 (MQ=255) aGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGc > 1:8687775/1‑68 (MQ=255) tCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAAt < 1:22304367/68‑1 (MQ=255) tCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAAt < 1:18895844/68‑1 (MQ=255) tCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAAt < 1:20835563/68‑1 (MQ=255) tCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAAt < 1:39927210/68‑1 (MQ=255) tCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAAt < 1:37485727/68‑1 (MQ=255) tCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAAt < 1:21379353/68‑1 (MQ=255) tCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAAt < 1:4186386/68‑1 (MQ=255) tCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAAt < 1:16095727/68‑1 (MQ=255) tCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAAt < 1:15127392/68‑1 (MQ=255) tCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAAt < 1:14572667/68‑1 (MQ=255) tCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAAt < 1:28730253/68‑1 (MQ=255) tCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAAt < 1:28979607/68‑1 (MQ=255) tCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAAt < 1:8251935/68‑1 (MQ=255) aTTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCaa > 1:18075983/1‑68 (MQ=255) ttACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTc < 1:13390733/65‑1 (MQ=255) ttACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTc < 1:11750209/65‑1 (MQ=255) ttACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAat < 1:2515767/68‑1 (MQ=255) ttACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAat < 1:7890211/68‑1 (MQ=255) aCTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAatat < 1:27626543/68‑1 (MQ=255) aCTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAatat < 1:23251962/68‑1 (MQ=255) aCTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAatat < 1:3020533/68‑1 (MQ=255) aCTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAatat < 1:38974553/68‑1 (MQ=255) aCTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAatat < 1:7094160/68‑1 (MQ=255) aCTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAatat < 1:12549930/68‑1 (MQ=255) aCTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAatat < 1:4594821/68‑1 (MQ=255) aCTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAatat < 1:40292960/68‑1 (MQ=255) aCTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAatat > 1:19716214/1‑68 (MQ=255) tGGCACATTGTTCCGGTTGCTGAGTGATCGCCTTATCCTGACTACAAAAGCAGGCAAATTCAatatat < 1:13980561/68‑1 (MQ=2) tGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAatatat < 1:36582068/68‑1 (MQ=255) tGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAatatat < 1:37909186/68‑1 (MQ=255) tGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAatatat < 1:33678989/68‑1 (MQ=255) ggCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATAtt > 1:34667867/1‑68 (MQ=255) ggCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATAtt < 1:38349639/68‑1 (MQ=255) cacaGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGc > 1:39551991/1‑68 (MQ=255) acaGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCa > 1:12971978/1‑68 (MQ=255) acaGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCa > 1:6586004/1‑68 (MQ=255) acaGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCa > 1:22655162/1‑68 (MQ=255) agagTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCaga > 1:42983576/1‑68 (MQ=255) agagTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCaga > 1:732872/1‑68 (MQ=255) agagTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCaga > 1:10430184/1‑68 (MQ=255) agagTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCaga > 1:28115001/1‑68 (MQ=255) agTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAgaga > 1:30653874/1‑68 (MQ=255) gTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCagag < 1:29542992/66‑1 (MQ=255) gTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCagag < 1:1146797/66‑1 (MQ=255) gTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCagag < 1:43652161/66‑1 (MQ=255) gTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCagag < 1:12092852/66‑1 (MQ=255) gTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCaga < 1:31049928/65‑1 (MQ=255) gTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCaga < 1:42454834/65‑1 (MQ=255) gTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAgaga < 1:9346710/67‑1 (MQ=255) gTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGAt > 1:29275035/1‑68 (MQ=255) cGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGc < 1:31504892/67‑1 (MQ=255) cGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGc < 1:35549265/67‑1 (MQ=255) cGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGc < 1:25953009/67‑1 (MQ=255) ggATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGt > 1:19855386/1‑68 (MQ=255) ggATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGt > 1:1098430/1‑68 (MQ=255) aTGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAg > 1:3289953/1‑68 (MQ=255) tGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAgg < 1:6147543/68‑1 (MQ=255) tGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAgg < 1:1837931/68‑1 (MQ=255) tGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAgg < 1:38837861/68‑1 (MQ=255) tGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAgg < 1:33418013/68‑1 (MQ=255) tGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAgg < 1:2448808/68‑1 (MQ=255) tGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAgg < 1:10687506/68‑1 (MQ=255) gCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAgg > 1:35205828/1‑67 (MQ=255) gCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAgg > 1:16333841/1‑67 (MQ=255) gTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTga > 1:12256451‑M2/1‑65 (MQ=255) gTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTga > 1:21688472‑M2/1‑65 (MQ=255) gTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTga > 1:17773716‑M2/1‑65 (MQ=255) gTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTga > 1:4082620‑M2/1‑65 (MQ=255) gTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTga > 1:15568835‑M2/1‑65 (MQ=255) gTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTga > 1:16840423‑M2/1‑65 (MQ=255) gTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTga > 1:43214429‑M2/1‑65 (MQ=255) gTGAACGCCTTATCCGCCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTga > 1:10087371‑M2/1‑65 (MQ=255) aCGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGc < 1:41508049/68‑1 (MQ=40) aCGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGc < 1:5639731/68‑1 (MQ=40) aCGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGc < 1:26764789/68‑1 (MQ=40) aCGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGc < 1:2373413/68‑1 (MQ=40) aCGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGc < 1:23854289/68‑1 (MQ=40) cTTATCCGGCCTACAAAAGCACGCAAATTCAATATGTTGCAGAGATTGCGTAGGCCTGATAAGCGTa < 1:24607786/67‑1 (MQ=255) atccggcCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAgcgc < 1:40502457‑M2/61‑1 (MQ=255) ccggcCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCa > 1:9566138‑M2/6‑67 (MQ=255) ccggcCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCa > 1:27032376‑M2/6‑67 (MQ=255) ccggcCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCa > 1:31958237‑M2/6‑67 (MQ=255) ccggcCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCCTACCGCa > 1:1495890‑M2/6‑67 (MQ=255) cggcCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATc > 1:21086266‑M2/5‑68 (MQ=255) cggcCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATc > 1:26282980‑M2/5‑68 (MQ=255) cggcCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATc > 1:29655569‑M2/5‑68 (MQ=255) cCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAg > 1:39223782‑M2/2‑67 (MQ=255) | GAACAACGTGGGAGTTTCAGATTACTGGCACAGAGTGCCGGATGCGGAGTGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGC > CP009273/4127681‑4127814 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |