| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1426905 | NA (NA) | 19 (0.040) | 6/96 | NT | 95.7% | coding (238/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein |
| ? | CP009273 | 1628833 = | 1 (0.000) | coding (310/576 nt) | tfaQ | Qin prophage; putative tail fiber assembly protein | |||||
Only 100 of 201 total aligned reads displayed.
ATCCGGAACAGTTTTTCTGCTTCCGTATCCTTCACCCAGGCTGTGCCGTTCCACTTCTGAAACTCCCCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGCCG > CP009273/1628766‑1628900 | ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:10705020‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:41311224‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:38380653‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:38149141‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:37570337‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:2876923‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:27183439‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:26009289‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:25789758‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:24880217‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:18740462‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:1526268‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:1148001‑M2/1‑1 (MQ=255)ttcaacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:10029056‑M2/1‑1 (MQ=255)ttcaacagagatgaggcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggc < 1:9294033‑M2/1‑1 (MQ=255)tgcaacagtgatgagtcatcgtggcatctcgttgaagctcatcggggtaaaacggtttatgacgtggc < 1:34755168‑M2/1‑1 (MQ=255) caacagtgatgagtcatcttggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCtt < 1:42327664‑M2/3‑1 (MQ=255) caacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCtt < 1:6613190‑M2/3‑1 (MQ=255) aacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCtt > 1:5924742‑M2/65‑67 (MQ=255) aacagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTc < 1:27558620‑M2/4‑1 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagattatcggggtaaaacggtttatgacgtggCTTcc > 1:16201630‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatctgggtaaaacggtttatgacgtggCTTcc > 1:6243930‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:27681138‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:2779036‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:28162140‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:3052211‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:30640683‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:958007‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:31223652‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:33269795‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:26587958‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:35219876‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:36834678‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:11118458‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:38670898‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:39174971‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:40042369‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:41861423‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:6417968‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:7463785‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:26283033‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:16536786‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:17670659‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:17879270‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:15100029‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:21294490‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:22177247‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:23069200‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:23661432‑M2/64‑68 (MQ=255) acagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTcc > 1:1365843‑M2/64‑68 (MQ=255) cagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:28692145‑M2/63‑68 (MQ=255) cagtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:33820527‑M2/63‑68 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:12422882‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:16458332‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:8374678‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:17051295‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:6857569‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:17765854‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:5093613‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:40907608‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:20284714‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:11328746‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:37240395‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:14348041‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:24626007‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:33978894‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:33671359‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:23539785‑M2/62‑67 (MQ=255) agtgatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCg > 1:23907008‑M2/62‑67 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCGGc < 1:40209214‑M2/8‑1 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTTCCGGCg > 1:27945026‑M2/59‑67 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaacggtttatgacgtggCTACCGGCg > 1:12765990‑M2/59‑67 (MQ=255) gatgagtcatcgtggcatctcgttgaagatcatcggggtaaaaaggtttatgacgtggCTTCCg < 1:20944394‑M2/6‑1 (MQ=255) gatcatcggggtaaaacggtttatgacgtggCTTGCGGCGATTACCAGGTAACATTTTGCGGTAACgg > 1:459731‑M2/32‑68 (MQ=255) gatcatcggggtaaaacggtttatgacgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACgg > 1:26308414‑M2/32‑68 (MQ=255) ggggtaaaacggtttatgacgtggCTTCCGGGGTTAACCAGGTAACATTTTCCGGTAACGGGCCGAGt > 1:38597313‑M2/25‑68 (MQ=255) acggtttatgacgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGaaat > 1:31464876‑M2/17‑68 (MQ=255) acggtttatgacgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGaaat > 1:18035361‑M2/17‑68 (MQ=255) acgtggCTTCCGGCGATACCCCGGTTACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATATcgcg > 1:39980669‑M2/7‑68 (MQ=255) acgtggCTTCCGGCGATAACCAGGTAACCTTTTCCGGTAACGGACCGAGTTCAGAAATAAATAAcgcg > 1:34939342‑M2/7‑68 (MQ=255) acgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAAcgcg > 1:19633662‑M2/7‑68 (MQ=255) acgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAAcgcg > 1:18906753‑M2/7‑68 (MQ=255) acgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAAcgcg > 1:1282491‑M2/7‑68 (MQ=255) acgtggCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAAcgcg > 1:36321088‑M2/7‑68 (MQ=255) acgtggCTTCCGGCGATAACCAGGGTACATTTTCCGGTAACGGACCGAGTTGAGAAATAAATAAcgcg > 1:42464922‑M2/7‑68 (MQ=255) ggCTTGCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCg > 1:2247556‑M2/3‑67 (MQ=255) cccTTCCGGCGATAACCAGGTAACTTTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGc < 1:42927609/68‑1 (MQ=18) cccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGc < 1:24276990/68‑1 (MQ=33) cccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGc < 1:29415271/68‑1 (MQ=33) cccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGc < 1:8202949/68‑1 (MQ=33) cccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGc < 1:8885177/68‑1 (MQ=33) cccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGc < 1:27386680/68‑1 (MQ=33) cccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGc < 1:41550372/68‑1 (MQ=33) cccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGc < 1:19765532/68‑1 (MQ=33) cccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGc < 1:37816429/68‑1 (MQ=33) cccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGc < 1:34383026/68‑1 (MQ=33) ccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGcc > 1:17642108/1‑68 (MQ=35) ccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGcc < 1:32032118/68‑1 (MQ=35) ccTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGcc < 1:32872727/68‑1 (MQ=35) CTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGCCg < 1:29747728‑M2/68‑1 (MQ=255) | ATCCGGAACAGTTTTTCTGCTTCCGTATCCTTCACCCAGGCTGTGCCGTTCCACTTCTGAAACTCCCCTTCCGGCGATAACCAGGTAACATTTTCCGGTAACGGACCGAGTTCAGAAATAAATAACGCGTCGCCG > CP009273/1628766‑1628900 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |