| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2943957 = | NA (NA) | 8 (0.020) | 5/92 | NT | NA | intergenic (+25/+37) | argA/recD | fused acetylglutamate kinase homolog (inactive)/amino acid N‑acetyltransferase/exonuclease V (RecBCD complex), alpha chain |
| ? | CP009273 | 2943974 = | NA (NA) | noncoding (3/14 nt) | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 733 total aligned reads displayed.
AAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGT > CP009273/2943907‑2944041 | ctggcggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatg > 1:24079337‑M2/68‑68 (MQ=255)ctggcggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatg < 1:5027270‑M2/1‑1 (MQ=255) aGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACg > 1:600256/1‑67 (MQ=255) gtgtTGATGGCGGATTTAGGGTAAGAGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTc > 1:23848999/1‑68 (MQ=255) ggcggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTc > 1:19578818‑M2/66‑68 (MQ=255) ggcggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTc > 1:11623411‑M2/66‑68 (MQ=255) ggcggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTc > 1:41653610‑M2/66‑68 (MQ=255) ggcggcgttgtttagttcacgggaataaacctaattgccggatgcgacctacgagtgttacgcatGTc > 1:19084338‑M2/66‑68 (MQ=255) gtTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGc < 1:20623081/68‑1 (MQ=255) cggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTCGc > 1:482694‑M2/64‑68 (MQ=255) cggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTCGc > 1:12505827‑M2/64‑68 (MQ=255) cggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTCGc > 1:3166372‑M2/64‑68 (MQ=255) cggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTCGc > 1:14215322‑M2/64‑68 (MQ=255) cggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTCGc > 1:32865588‑M2/64‑68 (MQ=255) cggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTCGc > 1:20785255‑M2/64‑68 (MQ=255) cggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTCGc > 1:20455135‑M2/64‑68 (MQ=255) cggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTCGc > 1:34851833‑M2/64‑68 (MQ=255) ggcgttgtttagttcacgggaataaacgtaattgccggatgcgacgtacgagtgttacgcatGTCGCa > 1:40999540‑M2/63‑68 (MQ=255) tGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCa < 1:31335200/67‑1 (MQ=255) tGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCg < 1:21953854/68‑1 (MQ=255) tGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCg < 1:39863438/68‑1 (MQ=255) tGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCg < 1:10009510/68‑1 (MQ=255) tGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCg > 1:16382662/1‑68 (MQ=255) ttAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTAc > 1:27078725/1‑68 (MQ=255) tAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACg < 1:14104287/68‑1 (MQ=255) tAGGGTAAGCGATGAAAATCGTCGGACGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACg < 1:19845565/68‑1 (MQ=255) aGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGt < 1:37611908/68‑1 (MQ=255) aGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGt < 1:15177212/68‑1 (MQ=255) aGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGt < 1:33491538/68‑1 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:15637100/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:622193/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:43125286/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:1497529/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:55012/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:34522000/1‑68 (MQ=255) gTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTa > 1:23621771/1‑68 (MQ=255) cGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTccc > 1:35290867/1‑68 (MQ=255) cGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTccc > 1:28114224/1‑68 (MQ=255) gATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTcc < 1:23123889/66‑1 (MQ=255) gATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTcc < 1:7792577/66‑1 (MQ=255) gAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGa < 1:17434634/68‑1 (MQ=255) gAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGa < 1:42663457/68‑1 (MQ=255) gAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGa < 1:29212539/68‑1 (MQ=255) gAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGa < 1:26722150/68‑1 (MQ=255) aattgccggatgcgacgtacgagtgttacgcatGTCGCATCCGGCAATTACGTTTATTCCCGTGAAc < 1:19314654‑M2/34‑1 (MQ=255) tcgtcgGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTaa < 1:18437309/68‑1 (MQ=255) tgcgacATGCGTAACACTCGTTCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgcc > 1:3434701‑M1/7‑68 (MQ=255) tgcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgcc > 1:20168296‑M1/7‑68 (MQ=255) gacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACgccgcc > 1:2756633‑M1/4‑68 (MQ=255) gacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACgccgcc > 1:35688740‑M1/4‑68 (MQ=255) gacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACgccgcc > 1:40668599‑M1/4‑68 (MQ=255) gacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACgccgcc > 1:2146431‑M1/4‑68 (MQ=255) aTGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGa < 1:37921832/68‑1 (MQ=255) tGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGa > 1:36912697/1‑67 (MQ=255) tGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGa > 1:36270456/1‑67 (MQ=255) tcGTAACACTCGTACGTCGCTTCAGGCAATTAGGTTTATTCCCGTTAACTAAACAACTCCGCCAGAcc < 1:4501321/67‑1 (MQ=255) gCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc < 1:24559028/68‑1 (MQ=255) gCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc < 1:12995623/68‑1 (MQ=255) gCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc < 1:23531952/68‑1 (MQ=255) gCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc < 1:8105031/68‑1 (MQ=255) gCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc < 1:25646535/68‑1 (MQ=255) gCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc < 1:28859771/68‑1 (MQ=255) cGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGAcc > 1:42069357/1‑67 (MQ=255) acacTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgc < 1:7285543/68‑1 (MQ=255) acacTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgc > 1:40520067/1‑68 (MQ=255) cacTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgc > 1:18100565/1‑67 (MQ=255) acTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgcg > 1:27850291/1‑67 (MQ=255) acTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgcg > 1:16761601/1‑67 (MQ=255) acTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgcg > 1:25051896/1‑67 (MQ=255) acTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgcg > 1:29635660/1‑67 (MQ=255) acTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgcg > 1:6500636/1‑67 (MQ=255) acTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTgc < 1:17138490/66‑1 (MQ=255) cTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgcc > 1:38717988/1‑68 (MQ=255) cTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgcc > 1:39117029/1‑68 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:6637677/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:9771816/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:10258473/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:11134134/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:31975120/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:30511606/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:29978430/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:26547648/68‑1 (MQ=255) cGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGcgccgc < 1:39423260/68‑1 (MQ=255) gTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCt < 1:13677426/68‑1 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa < 1:16113286/68‑1 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa < 1:10759499/68‑1 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa > 1:11784384/1‑68 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa < 1:13300484/68‑1 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa > 1:22391811/1‑68 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa < 1:25375379/68‑1 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa < 1:30743885/68‑1 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa < 1:3242431/68‑1 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa > 1:33974562/1‑68 (MQ=255) aCGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCa < 1:36454281/68‑1 (MQ=255) GTCTCATCAGGCAATTACGATTATTCCCGTGAACTAAACAACGCCGCCAGACAACTGCGCCGCTCAGt > 1:42911909‑M2/1‑68 (MQ=255) GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGt > 1:12094703‑M2/1‑68 (MQ=255) GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGt > 1:6894815‑M2/1‑68 (MQ=255) GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGt > 1:8848214‑M2/1‑68 (MQ=255) GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGt > 1:9048290‑M2/1‑68 (MQ=255) GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGt < 1:9612536‑M2/68‑1 (MQ=255) | AAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGT > CP009273/2943907‑2944041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |