| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,302,991 | A→C | 6.8% | intergenic (‑89/‑54) | clsA ← / → yciY | cardiolipin synthase 1/uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,302,991 | 0 | A | C | 6.8% | 1872.2 / 15.8 | 665 | intergenic (‑89/‑54) | clsA/yciY | cardiolipin synthase 1/uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base A (296/305); new base C (3/51); total (299/366) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.25e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 665 total aligned reads displayed.
GCATTGTTATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGT > CP009273/1302926‑1303056 | cATTGTTATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCg > 1:29545063/1‑68 (MQ=255) aTTGTTATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCg < 1:31752642/67‑1 (MQ=255) aTTGTTATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCg < 1:33977132/67‑1 (MQ=255) tATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggg < 1:33012990/68‑1 (MQ=255) gAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtg > 1:18725619/1‑68 (MQ=255) gAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtg > 1:37690581/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:16542426/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:23991951/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:26695850/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:21806726/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:27904769/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:21010296/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:28472329/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg < 1:30589345/68‑1 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:33464250/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:3559237/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:7875382/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:37296217/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:38265903/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:40265898/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:43427311/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:5665632/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:11199315/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:7204085/1‑68 (MQ=255) ttACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggggg < 1:25715442/68‑1 (MQ=255) ttACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggggg < 1:39121819/68‑1 (MQ=255) ttACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg < 1:36647138/66‑1 (MQ=255) ttACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg < 1:12645152/66‑1 (MQ=255) ttACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg < 1:26355767/66‑1 (MQ=255) cGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGtat > 1:38643133/1‑68 (MQ=255) cGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGtat < 1:35896921/68‑1 (MQ=255) cATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATaa > 1:39931149/1‑68 (MQ=255) cATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATaa > 1:27184326/1‑68 (MQ=255) cATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATaa > 1:34335950/1‑68 (MQ=255) cATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATaa > 1:10182625/1‑68 (MQ=255) cATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATaa > 1:13194163/1‑68 (MQ=255) cATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATaa > 1:22703878/1‑68 (MQ=255) cATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATaa > 1:17938003/1‑68 (MQ=255) cATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATaa > 1:1847912/1‑68 (MQ=255) tatGTATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGGCGGGGGTGGGGGTATAATg < 1:30278038/68‑1 (MQ=255) tatGGTTTAATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGGGGGGGTATAATg < 1:42375600/68‑1 (MQ=255) tatGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATg < 1:20016050/68‑1 (MQ=255) ggATTCATCTGGCAAATAAAATCGCGGGAAATGCTCTGGTGAGCGTCGGGGGTGGGGGTATAATGAcc < 1:16124437/68‑1 (MQ=255) ggATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGAcc < 1:22088099/68‑1 (MQ=255) ggATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGGCAGCGTCGGGGGTGGGGGTATAATGAcc < 1:23887938/68‑1 (MQ=255) aTTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACTAt > 1:19092987/1‑68 (MQ=255) cctCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCt < 1:11937027/66‑1 (MQ=255) cATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCt < 1:12139718/68‑1 (MQ=255) cATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCt < 1:15238278/68‑1 (MQ=255) cATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGGGGGGGTATAATGACCATTCt < 1:10018827/68‑1 (MQ=255) cttgCAAATAAAAACGCGGGAAACGCCCTGGGCCGCGTCGGGGGTGGGGGTATAATGACCATTCTGtt < 1:31252017/65‑1 (MQ=255) cttgCAAATAAAAACGCGGGAAAAGCACTGGTCCGCGGCGGGGGGGGGGGTATAATGACCATTCTGtt < 1:6002558/65‑1 (MQ=255) cTGGCAAATAAAAACGCGGGAAAAGCCCTGGTCCGCGGCGGGGGGGGGGGTATAATGACCATTCTGtt < 1:36358751/68‑1 (MQ=255) cTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGtt > 1:14569786/1‑68 (MQ=255) cTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGtt < 1:32006304/68‑1 (MQ=255) cTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGtt < 1:41889601/68‑1 (MQ=255) cTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGtt < 1:6370490/68‑1 (MQ=255) cTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGtt > 1:43057578/1‑68 (MQ=255) cTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGCGTATAATGACCATTCTGtt < 1:41392173/68‑1 (MQ=255) cTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGGGGGCGTATAATGACCATTCTGtt < 1:1428187/68‑1 (MQ=255) cTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGGCGGGGGTGGGGGTATAATGACCATTCTGtt < 1:12461466/68‑1 (MQ=255) cTGCCAAATAAAAACGCGGGAAACGCACTGGTCAGCGGCGGGGGGGGGCGTATAATGACCATTCTGtt < 1:7017544/68‑1 (MQ=255) cAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTAtt > 1:16869708/1‑67 (MQ=255) cAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTAtt > 1:26052531/1‑67 (MQ=255) cAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTAtt > 1:464502/1‑67 (MQ=255) aaaTAAAAACGCGGGAAACGCACTGGTCAGCGTCGGGGGGGGGGGTATAATGACCATTCTGTTATTGc < 1:23121828/68‑1 (MQ=255) aaaTAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGc < 1:912573/68‑1 (MQ=255) aTAAACACGCGGGAAACGCCCTGGGCAGCGGCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCAt < 1:28793653/68‑1 (MQ=255) aTAAAACCGCGGGAACAGCACTGGTCCGCGTCGGGGGGGGGGGAATAATGACCATTCTGTTATTGCAt < 1:4457582/68‑1 (MQ=255) aTAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCAt < 1:30038186/68‑1 (MQ=255) acaaCGCGGCAAACGCACTGGGCAGCGTCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:32762309/66‑1 (MQ=255) aaatCGCGGGAAAAGCACTTGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:8874485/68‑1 (MQ=255) aaaaCGCGGTAAAAGCACTGGGCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:8375104/68‑1 (MQ=255) aaaaCGCGGTAAAAGCACTGGCCCCCTTCGGGGGTGGGCGTATAATGACCATTCTGTTATTGCATaga < 1:23579170/68‑1 (MQ=255) aaaaCGCGGGAAATGCACTGGTCTGCGTGGGGGGTGGGGGAATAATGACCATTCTGTTATTGCATaga < 1:15729188/68‑1 (MQ=255) aaaaCGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:22329327/68‑1 (MQ=255) aaaaCGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:39579743/68‑1 (MQ=255) aaaaCGCGGGAAAAGCACTGGTCAGCGTCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:9636377/68‑1 (MQ=255) aaaaCGCGGGAAAAGCACTGGTCAGCGGCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:8496126/68‑1 (MQ=255) aaaaCGCGGGAAAAGCACTGGGCAGCGGCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:21414980/68‑1 (MQ=255) aaCGCGGGAAAAGCACTGGTCAGCGGCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGagt < 1:26985171/68‑1 (MQ=255) aaCGCCGGAAAAGCACTGGTCAGCGTCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATAGagt < 1:41175379/68‑1 (MQ=255) cgcgGGAAAAGCACTGGTCCGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGagtag < 1:19665786/68‑1 (MQ=255) cgcgGGAAAAGCACTGGGCAGCGTCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATAGagtag < 1:17537837/68‑1 (MQ=255) gcgGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGagtagt > 1:35165449/1‑68 (MQ=255) gggAAAAGCACTGGTGAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGCGTAGtt < 1:20664426/67‑1 (MQ=255) gAAAAGCCCTGGTCAGCGGCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAAc < 1:40736955/68‑1 (MQ=255) aaaaGCCCTGGGCCGCGTCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAAc < 1:5420936/67‑1 (MQ=255) aaaaGCAGTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAAc < 1:2514329/67‑1 (MQ=255) aaaaGCACTGGGCAGCGTCGGGGGGGGGGGAATAATGACCATTCTGTTATTGCATAGAGTAGTTAAc < 1:6578868/67‑1 (MQ=255) aaaaCCACTGGTCACCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAAc < 1:14032796/67‑1 (MQ=255) gcccTGGTCCGGGGCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGaa < 1:42852310/65‑1 (MQ=255) cACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGaa > 1:34706211/1‑67 (MQ=255) cACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGaa > 1:27625291/1‑67 (MQ=255) aCTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGaa < 1:11498095/66‑1 (MQ=255) aCTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGc > 1:29330288/1‑68 (MQ=255) ggTCAGCGTCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCgg < 1:24677626/67‑1 (MQ=255) ggTCAGCGGCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGa < 1:10701122/68‑1 (MQ=255) tCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGt > 1:14944731/1‑68 (MQ=255) cAGCGGCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGt < 1:4158209/67‑1 (MQ=255) | GCATTGTTATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGT > CP009273/1302926‑1303056 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |