| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,460,593 | C→G | 6.4% | pseudogene (945/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,460,593 | 0 | C | G | 6.4% | 1301.5 / 35.4 | 412 | pseudogene (945/2513 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| Reads supporting (aligned to +/- strand): ref base C (156/221); new base G (13/11); total (180/232) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 458 total aligned reads displayed.
TCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCC > CP009273/1460526‑1460659 | tCGACGGTGACAAGGCCATCGTCAATAACGGAGGCGAGAGCACCATCACCAACGGTggcaccggcacc < 1:22312119/68‑1 (MQ=255)tCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTggcaccggcacc < 1:14483962/68‑1 (MQ=255) gACGGTGACATGGCCATCGTCAATAACGAAGTCGAGAGCACCATCACCAACGGTGGCACCGGCACCCa < 1:12104561/68‑1 (MQ=255) gACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACGATCACCAAAGGAGGCACCGGCACTCa > 1:5388311/1‑68 (MQ=11) gACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCa < 1:160136/68‑1 (MQ=255) ctgTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCCTGACCAACGGTGGCACCGGCACCCAGa < 1:18549802/66‑1 (MQ=18) cGGTGACAAGGCCATGGTCAATAACGAAGGCGAGAGCTCCATCACCAACGGTGGCACCGGCACGCAGa < 1:35306321/68‑1 (MQ=18) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCTCCATCACCAACGGTGGCACCGGCACGCAGa < 1:16847578/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCTGCACCCAGa < 1:25548818/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCTCCCAGa < 1:32984688/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAg < 1:19492307/67‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:13607843/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:38177272/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:12585296/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:9039484/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:42537094/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:32452785/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:29809077/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:19108012/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:28765162/68‑1 (MQ=255) cGGTGACAAGGCCATCGTCAATAACGAAGGCGAGACCACCATCACCAACGGTGGCACCGGCACCCAGa < 1:18023331/68‑1 (MQ=255) ggTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCCCGCAGAt > 1:3204390/1‑68 (MQ=255) ggTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACGCAGAt > 1:839813/1‑68 (MQ=255) ggTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGAt > 1:9391980/1‑68 (MQ=255) ggTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGAt > 1:22548614/1‑68 (MQ=255) ggTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGAt > 1:18396648/1‑68 (MQ=255) ggTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACAATCACCAAAGGAGGCACCGGCACACAGAt > 1:23269855/1‑68 (MQ=14) tGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGAtt < 1:27789437/67‑1 (MQ=255) aCAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAAAGGTGGCACCGGCACTCAGATCaac > 1:36149320/1‑67 (MQ=11) cAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAAt < 1:29149917/67‑1 (MQ=255) cAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAAt < 1:33245663/67‑1 (MQ=255) aGGCGATCGTCAATAACGAAGGCGAGAGCTCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGt < 1:16969534/68‑1 (MQ=11) aGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGt < 1:42853227/68‑1 (MQ=255) aGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAAAGGAGGCACCGGCACGCAGATTAAAGGt > 1:11150376/1‑68 (MQ=14) ggCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtg > 1:7824018/1‑68 (MQ=255) ggCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGAGGCACCGGCACGCAGATGAACGGta > 1:11386930/1‑67 (MQ=11) ggCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAAAGGTGGCACCGGCACCCAGATTAAAGGtg > 1:30834483/1‑68 (MQ=255) ccATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtgat > 1:42783194/1‑68 (MQ=255) ccATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtgat > 1:24765204/1‑68 (MQ=255) ccATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtgat > 1:37474887/1‑68 (MQ=255) ccATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGtgat > 1:35638284/1‑68 (MQ=255) ccATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGAGGCACCGGCACTCAGATTAAAGGtaac > 1:13273015/1‑65 (MQ=11) cGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACg < 1:28979224/68‑1 (MQ=255) cGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACg < 1:6770834/68‑1 (MQ=255) gTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACg > 1:386077/1‑67 (MQ=255) gTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACg > 1:2413498/1‑67 (MQ=255) tCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACGCAGATGAACGGTGAGGACGc > 1:29202097/1‑67 (MQ=11) aaTAACGAAGGCTAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCAc < 1:20495718/68‑1 (MQ=255) aTAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACGCAGAt > 1:28132816/1‑49 (MQ=255) aTAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACg > 1:35986901/1‑68 (MQ=255) aTAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACg > 1:14839191/1‑68 (MQ=255) aTAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACg > 1:33611728/1‑68 (MQ=255) tAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACgg < 1:27397976/68‑1 (MQ=255) caCGAAGGCGAGAGCACGATCACCTACGTTGGCACCGGGACCCATATTAATGGTGATGACGCCACTGc < 1:10517623/67‑1 (MQ=14) aaCGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGc > 1:31390345/1‑68 (MQ=255) aaCGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGc < 1:21710814/68‑1 (MQ=255) aaCGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGc < 1:20881078/68‑1 (MQ=255) aaCGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGc > 1:38996582/1‑68 (MQ=255) aaCGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGc < 1:37311732/68‑1 (MQ=255) aaCGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGc > 1:33803790/1‑68 (MQ=255) aCGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCa > 1:23504725/1‑68 (MQ=255) aCGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCa > 1:26256261/1‑68 (MQ=255) aCGAAGGCGAGAGCACAATCACCAACGGTGGCACCGGCACTCAGATaaa > 1:41572173/1‑49 (MQ=11) cGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTTATGGTGATGACGCCACGGCaa > 1:5772449/1‑68 (MQ=255) cGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCaa > 1:15244976/1‑68 (MQ=255) cGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCaa < 1:6096040/68‑1 (MQ=255) gAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCaaa < 1:3408987/68‑1 (MQ=255) gAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCaa > 1:43092713/1‑67 (MQ=255) aGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAaaca > 1:36591741/1‑68 (MQ=255) ggCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAaaca > 1:39964893/1‑67 (MQ=255) ggCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAaaca > 1:7292006/1‑67 (MQ=255) ggCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAaaca > 1:17242070/1‑67 (MQ=255) gCACGATCAACAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACgg < 1:36793510/67‑1 (MQ=255) gCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGc > 1:12952724/1‑68 (MQ=255) cATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCaaaa < 1:26674631/68‑1 (MQ=40) cATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCaaa > 1:40358044/1‑67 (MQ=40) aTCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCaaaa > 1:25849020/1‑67 (MQ=40) tCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAAcc > 1:12336488‑M2/1‑66 (MQ=255) aCCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAAAAACACCGGAAAAAcca < 1:34604380‑M2/67‑4 (MQ=255) cAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCGAATAACAGGGGAAAAAcc < 1:8874125‑M2/64‑3 (MQ=255) cAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCCAAAAACAGGGGAAAAAccacgg < 1:39591925‑M2/68‑7 (MQ=255) cAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAAccaccg > 1:21419262‑M2/1‑62 (MQ=255) cAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAAccaccg < 1:9231028‑M2/68‑7 (MQ=255) cAACGGTGGCACCGGCACCCAGATTAAAGGTGAAGACGCCACGGCGAAAAACAGGGGAAAAaccacgg > 1:2114903/1‑66 (MQ=11) aCGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAAccaccgtt < 1:11822541‑M2/68‑9 (MQ=255) aCGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAAccaccgtt < 1:30545798‑M2/68‑9 (MQ=255) cGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCTAAAAACACCGGAAAAAccacagttg < 1:43536262‑M2/68‑10 (MQ=255) cGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAAccaccgttg < 1:17664857‑M2/68‑10 (MQ=255) ggTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAAccaccgttg < 1:25185834‑M2/67‑10 (MQ=255) ggTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACCGCAAAAccaccgttg < 1:4973881‑M2/67‑10 (MQ=255) ggTGGCACCGGCACCCAGATTAAAGGTGATGACGCCACGGCAAACAACAACGGCAAAAccaccgttg < 1:34862739‑M2/67‑10 (MQ=255) ggTGGCACCGGCACCCAGATAAACGGTGATGACGCCACGGCAAACAACAACGGCAAAAccaccgt > 1:1928293‑M2/1‑58 (MQ=255) gTGGCACCGGCACCCAGATTAAAGGTGATGACGCCACGGCAAAAAACAAAGGAAAAACCACAGTTGag > 1:16513426/1‑67 (MQ=11) tGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACg > 1:2376503/1‑68 (MQ=40) ggcaccggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACg < 1:41369000/67‑1 (MQ=40) accggcaccCAGATTAATGGTGATGACGCCACGGCAAATAACAGGGGAAAAACCCCGGTTGATGGCaa > 1:40759901/1‑68 (MQ=14) accggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCaa > 1:10147900/1‑68 (MQ=40) cggcaccCAGATTAATGGTGATGACGCCACGGCGAAAAACAGAGGAAAAACCACGGTTGATGGAAAgg > 1:20006763/1‑68 (MQ=14) gcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAt > 1:24334786/1‑68 (MQ=40) accCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGAtt < 1:42111103/67‑1 (MQ=40) | TCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCC > CP009273/1460526‑1460659 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |