| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,036 | G→C | 5.6% | A621P (GCC→CCC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,036 | 0 | G | C | 5.6% | 887.1 / 5.7 | 357 | A621P (GCC→CCC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base G (194/138); new base C (2/21); total (197/160) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.64e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 398 total aligned reads displayed.
AGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGA > CP009273/1702972‑1703103 | aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGACCCAGAAGAACAGGTCGATCCGCGCAAAgcc > 1:1891439/1‑67 (MQ=25)aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTGGATCCGCGCAAAgcg > 1:31390065/1‑66 (MQ=255)aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgcg > 1:14209966/1‑66 (MQ=25)aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGAGCAAAgcc > 1:40608332/1‑67 (MQ=25)aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAgcg > 1:28224733/1‑66 (MQ=255)aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAgcc > 1:25475946/1‑67 (MQ=25)aGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAgcc > 1:11611348/1‑67 (MQ=25) gcgcgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAgcgg > 1:33843560/1‑65 (MQ=25) gcgcgcAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAgcggc > 1:9723085/1‑68 (MQ=255) tGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAg < 1:41176901/66‑1 (MQ=35) tGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGcc < 1:41009667/68‑1 (MQ=35) ggAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCg < 1:9296996/68‑1 (MQ=35) aaCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:42192670/67‑1 (MQ=35) aaCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:2409302/67‑1 (MQ=35) aaCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:27239886/67‑1 (MQ=35) aaCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:27917870/67‑1 (MQ=35) aaCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:19145881/67‑1 (MQ=35) aaCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:11050196/67‑1 (MQ=35) aaCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:30470102/67‑1 (MQ=35) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTAGACGCCGCTa > 1:27288189/1‑68 (MQ=11) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTAGAAGCGGCTa > 1:2493768/1‑68 (MQ=11) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTGGACGCGGCTa > 1:33265085/1‑68 (MQ=11) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTa > 1:23779051/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCt < 1:20802062/67‑1 (MQ=35) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa > 1:20307456/1‑68 (MQ=35) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa > 1:10009076/1‑68 (MQ=35) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa < 1:8786003/68‑1 (MQ=35) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCAGCCGTCGAAGCCGCTa > 1:7113710/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCCGTAGAAGCGGCTa > 1:13913308/1‑68 (MQ=11) cAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGCTAAGCGCAAAGACGCCGGCGACGACGCTAt > 1:26027318/1‑68 (MQ=11) aGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCCGTCGAAGCCGCTAtt > 1:42563547/1‑68 (MQ=255) aGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCGGCTAtt > 1:17884453/1‑68 (MQ=255) aaCAGGCTAATGCGGAACCAGAAGCACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc < 1:23928249/67‑1 (MQ=25) ggCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt < 1:25810879/67‑1 (MQ=35) gCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCgcg > 1:22918663/1‑65 (MQ=25) gCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCGGCTATTGCCCgcg > 1:24511871/1‑65 (MQ=11) cTAATTCGGAACCAGAAGAAGAGGTCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt < 1:32136279/65‑1 (MQ=11) cTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTAGACGCCGCTATTGACCgacc > 1:8518818/1‑64 (MQ=11) cTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTTGAAGCGGCTATTGCCCGAGc > 1:42307341/1‑67 (MQ=11) cTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTAGCAGCCGCTATTGCCCGAGca > 1:17017252/1‑67 (MQ=11) cTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGt < 1:25575806/65‑1 (MQ=255) cTAATGCGGAACCAGAAGAACAGGACGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGAGcc > 1:22124295/1‑68 (MQ=11) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACGTGCCAAAGc > 1:36231612/1‑68 (MQ=25) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACGTGCCAAAGc > 1:26881354/1‑68 (MQ=25) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCGGCTATTGCCCGCGCCaagg > 1:40257328/1‑65 (MQ=11) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGCGCGaacg > 1:37866618/1‑65 (MQ=11) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGACGCCGAAGCAGCCGCTATTGCCCGGGCCAAAGc > 1:34433031/1‑68 (MQ=11) gCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCCGCAGTAGAAGCGGCTATTGCCCGCGCGaagg > 1:1515787/1‑65 (MQ=11) ggAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCa < 1:23465298/67‑1 (MQ=37) ggAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCa < 1:15935749/67‑1 (MQ=37) aCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCa > 1:26174563/1‑68 (MQ=40) aCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAcgcacgca > 1:34894336/1‑68 (MQ=255) ccAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCCCGCaa > 1:12525722/1‑68 (MQ=25) ccAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAGGCCCGCaa > 1:6381294/1‑68 (MQ=11) cacaagacCAGGTAGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 1:14686787/65‑1 (MQ=14) cAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 1:43423475/68‑1 (MQ=40) cAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 1:27055902/68‑1 (MQ=40) cAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 1:25271479/68‑1 (MQ=40) cAGAAGAACAGGTCGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 1:39890188/68‑1 (MQ=255) cAGAAGAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 1:18643522/68‑1 (MQ=255) agaagaACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:32923824/42‑1 (MQ=38) aagaaCAGGTCGATCCGCGCAAAGCCCCCGTACAACCAGCAATAGCCCGTGCCAAAGCACGCAAGCTg > 1:21482411/1‑68 (MQ=14) aacaaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCt < 1:21161560/64‑1 (MQ=1) acaaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTgg < 1:37229923/66‑1 (MQ=14) gaaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGa > 1:23688921/1‑68 (MQ=37) aaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGaa < 1:5211172/68‑1 (MQ=35) aaCAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGa > 1:5028955/1‑67 (MQ=11) aaCAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGTGCCAAAGCACGAAAGCGGGa > 1:5793160/1‑67 (MQ=11) aCATGTAGATCCGCGCAAAGCCGCCGTAGAAGACGCTATTGACCGTGCCAAAGCACTCAACCTTGacc > 1:22845072/1‑66 (MQ=2) aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAACGCACGCAAGCTGGAAc > 1:32748694/1‑68 (MQ=25) aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAAc > 1:22389991/1‑68 (MQ=35) aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTggca > 1:1331257/1‑65 (MQ=255) aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAAc > 1:31541824/1‑68 (MQ=25) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACa > 1:7485392/1‑67 (MQ=35) tggATCCGCGCAAAGCCGCCGTGGAAGCCGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGc < 1:10826859/64‑1 (MQ=11) tCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCa > 1:36777523/1‑67 (MQ=11) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCCACGCACGCAAGCGGGCCCAGCa > 1:27624246/1‑67 (MQ=11) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCACGCAAGCGGGAACAGCa > 1:5531145/1‑67 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCa > 1:38384213/1‑67 (MQ=25) gcGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGc < 1:11908712/65‑1 (MQ=25) gcGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa < 1:43656674/66‑1 (MQ=25) tCCTCGCAAAGCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:29412392/68‑1 (MQ=255) tCCTCGCAAACCAGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:39305589/68‑1 (MQ=11) tCCGCGGAAAGCAGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:41383400/68‑1 (MQ=255) tCCGCGCAAAGCGGCCGTCGAAGCCGCTTTTGCCCGTGCCAAAGCACGGAAGCTGGAACAGCAACAgg < 1:10495849/68‑1 (MQ=11) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:32582510/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:28534530/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:1931057/68‑1 (MQ=35) tCCGCGCAAACCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:16610479/68‑1 (MQ=255) tCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:19693079/68‑1 (MQ=255) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:16265240/1‑66 (MQ=35) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAACGCACGCAAGCGGGAACAGCACCAggg > 1:5393627/1‑67 (MQ=11) ccGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGc < 1:2317344/68‑1 (MQ=25) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt > 1:31181665/1‑68 (MQ=35) aaaGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATg < 1:6988036/67‑1 (MQ=35) aaaGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATg < 1:15438435/67‑1 (MQ=35) gccgccGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGa > 1:35855107/1‑68 (MQ=40) gccgccGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGa > 1:20459946/1‑68 (MQ=40) gccgccGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGa > 1:41748799/1‑68 (MQ=40) gccgccGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGa > 1:37623455/1‑68 (MQ=40) | AGCGCGCAAGCTGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGA > CP009273/1702972‑1703103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |