| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,050 | C→A | 6.7% | A625A (GCC→GCA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,050 | 0 | C | A | 6.7% | 931.1 / 12.7 | 436 | A625A (GCC→GCA) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base C (186/193); new base A (3/31); total (212/224) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.50e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 454 total aligned reads displayed.
TGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG > CP009273/1702983‑1703116 | aaCAGCAACCGGCTAATGCGGAACCAGAAGAACAGGGCGATCCGCGCAAAGCCGCCGGCGAAGCCGc < 1:43612028/67‑1 (MQ=11) aaCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:11050196/67‑1 (MQ=35) aaCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:25470337/67‑1 (MQ=35) aaCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:42282183/67‑1 (MQ=35) aaCACCAACAGGCTAATTCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:31498806/67‑1 (MQ=255) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCAGTAGACGCCGCTa > 1:27288189/1‑68 (MQ=11) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa > 1:10009076/1‑68 (MQ=35) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa > 1:11856404/1‑68 (MQ=35) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa > 1:20307456/1‑68 (MQ=35) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCGGCCGTAGAAGCGGCTa > 1:13913308/1‑68 (MQ=11) aCAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCCGCCGTAGCAGCGGCTa > 1:28398547/1‑68 (MQ=11) aCAGCAACAGGCTAATGCGGAACCACAAGAACAGCTCGATCCGCGGAAAGCCGCCGTCGAAGCCGCt < 1:17610975/67‑1 (MQ=11) cAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTg > 1:26899877/1‑67 (MQ=35) aaCAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc < 1:29974015/67‑1 (MQ=35) gCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCCGCCGTGGCAGCCGCTATTGCCCGGGc > 1:19153619/1‑68 (MQ=11) gCTAATGCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCCGCAGTAGAAGCGGCTATTGCCCgcg > 1:22573942/1‑65 (MQ=11) cTAATTCGGAACCAGAAGAAGAGGTCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt < 1:32136279/65‑1 (MQ=11) cTAATGCGGAACCAGAAGAACAGGTGGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGAGca > 1:38385494/1‑67 (MQ=11) cTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCCGTCGAAGCCGCTATTGCCCgcgc > 1:15836032/1‑67 (MQ=255) cTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTg < 1:16588162/66‑1 (MQ=35) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCGGCCGTAGCAGCGGCTATTGCCCGCGCAAAAg > 1:25727724/1‑67 (MQ=11) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGCGCAAAAg > 1:26593754/1‑67 (MQ=11) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGc > 1:2304178/1‑68 (MQ=25) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCAAAAGc > 1:14175171/1‑68 (MQ=255) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACGTGCCAAAGc > 1:36231612/1‑68 (MQ=25) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTCGAAGCCGCTATTGCCCGGGCAAAAGc > 1:1893080/1‑68 (MQ=11) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCGGCTATTGCCCGCGCCaagg > 1:40257328/1‑65 (MQ=11) gCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGCGCGaacg > 1:37866618/1‑65 (MQ=11) gCGGAACCAGAAGAACAGGTAGATCCGCGCAAAGCCGCAGTAGAAGCGGCTATTGCCCGCGCGaagg > 1:1515787/1‑65 (MQ=11) ggAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCa < 1:23465298/67‑1 (MQ=37) ggAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCGGCTATTGCCCGAGCCAACGcca > 1:7198255/1‑66 (MQ=11) aaCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACg < 1:2593955/67‑1 (MQ=40) aCCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAcgcacgca > 1:34894336/1‑68 (MQ=255) ccAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAGGCCCGCaa > 1:6381294/1‑68 (MQ=11) cAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCga < 1:21353164/53‑2 (MQ=18) cAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 1:25271479/68‑1 (MQ=40) cAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 1:26159110/68‑1 (MQ=40) cAGAAGAACAGGTCGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 1:39890188/68‑1 (MQ=255) aagaaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCAAAAGCACGCAAGCTg > 1:28012890/1‑68 (MQ=255) aagaaCAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCAAAAGCCCGAAAGCTg > 1:23876469/1‑68 (MQ=11) agaaCAGGTCGATCCGCGCAAAGCCTCGGTCGTATACGCTATTCCCCGCGCCCAAGCAATCAAGcgcg > 1:42449091/1‑65 (MQ=2) agaaCAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGcag > 1:20614618/1‑65 (MQ=11) acaaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTgg < 1:37229923/66‑1 (MQ=14) acaaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTgg > 1:1610295/3‑68 (MQ=14) gaaCAGGTCGATCCGCGCAAAGCCGCCGTAGCAGCCGCTATTGCCCGAGCGAAAGCCCGCAAGCTgg > 1:4399999/1‑67 (MQ=11) gaaCAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCGAAAGCACGCAAGCGGGa > 1:24310850/1‑68 (MQ=11) caaCAGGGCGATCCTCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGa < 1:21813409/67‑1 (MQ=11) caCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGGTggc > 1:29390275/2‑66 (MQ=255) aaCAGGTCGCTCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCGAAAGCACGCAAGCGGGa > 1:24040498/1‑67 (MQ=11) aaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGaa < 1:22237929/68‑1 (MQ=35) aaCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGa > 1:34590671/1‑67 (MQ=35) aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAAc > 1:22389991/1‑68 (MQ=35) aCAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTggca > 1:1331257/1‑65 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAATCTGAAACa > 1:27113876/1‑67 (MQ=255) aGGTCGATCCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACa > 1:5111556/1‑67 (MQ=25) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCa > 1:22861761/1‑68 (MQ=25) tggATCCGCGCAAAGCCGCCGTGGAAGCCGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGc < 1:10826859/64‑1 (MQ=11) tCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAACAGCa > 1:36777523/1‑67 (MQ=11) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa > 1:20915844/1‑67 (MQ=35) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa < 1:23693295/67‑1 (MQ=35) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa < 1:33074433/67‑1 (MQ=35) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCCACGCACGCAAGCGGGCCCAGCa > 1:27624246/1‑67 (MQ=11) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCGGGAACAGCa > 1:959796/1‑67 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCACGCAAGCGGGAACAGCa > 1:5531145/1‑67 (MQ=255) gATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCAGGAACAGCAACa > 1:427335/1‑68 (MQ=25) tCCTCGGAAATCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:41597073/68‑1 (MQ=11) tCCTCGCAAAGCTGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:32800203/68‑1 (MQ=255) tCCTCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:41119090/68‑1 (MQ=255) tCCTCGCAAACCAGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:39305589/68‑1 (MQ=11) tCCGCGCAAAGCGGCCGTCGAAGCCGCTTTTGCCCGTGCCAAAGCACGGAAGCTGGAACAGCAACAgg < 1:10495849/68‑1 (MQ=11) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:12974119/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:1931057/68‑1 (MQ=35) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:9006491/68‑1 (MQ=35) tCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:19693079/68‑1 (MQ=255) cgcgGAAAGCCGCCGTGGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:37678392/66‑1 (MQ=255) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt > 1:31181665/1‑68 (MQ=35) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt > 1:16860351/1‑68 (MQ=35) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt > 1:9123079/1‑68 (MQ=35) aaaGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATg < 1:6988036/67‑1 (MQ=35) aaGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGcg > 1:5309554/1‑67 (MQ=255) gccgccGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGcggt > 1:25018305/1‑65 (MQ=14) gccgccGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGa > 1:41748799/1‑68 (MQ=40) gccgccGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGa > 1:35855107/1‑68 (MQ=40) cgccgTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAg < 1:42132329/67‑1 (MQ=255) cgccgTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAg < 1:33844675/67‑1 (MQ=255) cgccgTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAg < 1:32698689/67‑1 (MQ=255) cgccgTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAg < 1:40602974/67‑1 (MQ=255) cgTAGAAGCAGCTATTGCCCGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCa < 1:33631542/67‑1 (MQ=14) tCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGa > 1:8566384/1‑67 (MQ=255) cGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaac < 1:17138052/68‑1 (MQ=255) cGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaac < 1:7738641/68‑1 (MQ=255) cGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaa < 1:18676116/67‑1 (MQ=255) gAAGCCGCTATCGCCCGAGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaaca < 1:24716232/68‑1 (MQ=255) gAAGCAGCTATTGCCCGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaaca < 1:18102221/68‑1 (MQ=255) aGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaacaac > 1:5814191/1‑68 (MQ=255) aGCCGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaacaac < 1:12311354/68‑1 (MQ=255) aGCCGCTATCGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaacaac < 1:32326064/68‑1 (MQ=255) ccGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg > 1:41294769/1‑68 (MQ=255) cGCTATTGCCCGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg < 1:286355/67‑1 (MQ=255) cGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg < 1:1460025/67‑1 (MQ=255) | TGGAACAGCAACAGGCTAATGCGGAACCAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAG > CP009273/1702983‑1703116 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |