| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 356,924 | C→T | 100% | intergenic (+67/+36) | cynX → / ← lacA | putative cyanate transporter/thiogalactoside acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 356,924 | 0 | C | T | 100.0% | 1680.0 / ‑6.7 | 466 | intergenic (+67/+36) | cynX/lacA | putative cyanate transporter/thiogalactoside acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (192/271); minor base G (0/2); total (192/274) | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 466 total aligned reads displayed.
GCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCT > CP009273/356859‑356987 | gCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGACt < 1:38740777/68‑1 (MQ=255) gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:25310834/68‑1 (MQ=255) gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:8585403/68‑1 (MQ=255) gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:21371815/68‑1 (MQ=255) gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:12396152/68‑1 (MQ=255) gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:28099829/68‑1 (MQ=255) gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:17464765/68‑1 (MQ=255) gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:37013988/68‑1 (MQ=255) gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:32213860/68‑1 (MQ=255) gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:42280486/68‑1 (MQ=255) gCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATaa > 1:8780234/1‑68 (MQ=255) gCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATaa > 1:6104851/1‑68 (MQ=255) gCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATaa > 1:8212999/1‑68 (MQ=255) ttGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAgc < 1:1214491/68‑1 (MQ=255) ttGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAgc < 1:1712541/68‑1 (MQ=255) ttCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCa > 1:23967954/1‑68 (MQ=255) tCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCa > 1:39187470/1‑67 (MQ=255) tCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCa > 1:28695675/1‑67 (MQ=255) tCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCa < 1:7094503/67‑1 (MQ=255) ccTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGc > 1:41620866/1‑68 (MQ=255) tGCGCTTTGTTCATGCCGTATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:20002823/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:18470081/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:29294628/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:30675514/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:3768247/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:13697/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:33266277/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:1121446/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:27425361/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:22637901/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:4952661/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:5636821/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:35599150/68‑1 (MQ=255) gcgcTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTa > 1:23754365/1‑68 (MQ=255) gcTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATc > 1:31323729/1‑68 (MQ=255) gcTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATc > 1:42648814/1‑68 (MQ=255) ttGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAgg < 1:25151707/68‑1 (MQ=255) tCAAGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCaa < 1:35253535/67‑1 (MQ=255) cATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAAtt < 1:12668809/68‑1 (MQ=255) tGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAAtttt > 1:13348447/1‑68 (MQ=255) gCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAAttttt > 1:43209158/1‑68 (MQ=255) ccGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTta > 1:7604652/1‑68 (MQ=255) ccGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTta > 1:30297965/1‑68 (MQ=255) ccGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTta > 1:6882714/1‑68 (MQ=255) aTGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATaa < 1:39703825/67‑1 (MQ=255) aTGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATaa < 1:41237841/67‑1 (MQ=255) tGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAAtt > 1:15503398/1‑68 (MQ=255) tGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAAtt > 1:5928947/1‑68 (MQ=255) tGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAAtt > 1:33041108/1‑68 (MQ=255) tGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAAtt < 1:29131013/68‑1 (MQ=255) gCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTaa > 1:38324813/1‑67 (MQ=255) cTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTaa > 1:16830403/1‑66 (MQ=255) tGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGAc > 1:25943420/1‑68 (MQ=255) gTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACg < 1:28349711/68‑1 (MQ=255) gTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACg < 1:23144800/68‑1 (MQ=255) gTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACg > 1:34577124/1‑68 (MQ=255) gTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACg > 1:43643586/1‑68 (MQ=255) gTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACg > 1:4060301/1‑68 (MQ=255) tAGATCGCTGAACTTTTAGGTCTGATAAGCGCAGCATAACGGGCAATTTTTATAATTTAAACTGACGa > 1:19092549/1‑68 (MQ=37) tAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGa > 1:8040900/1‑68 (MQ=255) aGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGAt < 1:15922485/68‑1 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc > 1:22019648/1‑68 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc > 1:21004994/1‑68 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc > 1:14795983/1‑68 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc > 1:35811967/1‑68 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc > 1:13494719/1‑68 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc > 1:37394384/1‑68 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGAGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc > 1:36636475/1‑68 (MQ=255) tCGCTGAACTTGTATTTCTGATTAGCGCAGCGTATCAGGCAATTTTTATATTTTAAACTGACGATTCa < 1:24266119/68‑1 (MQ=25) tCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCa < 1:32559526/68‑1 (MQ=255) tCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCa > 1:34225703/1‑68 (MQ=255) tCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCa > 1:24394176/1‑68 (MQ=255) tCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCa > 1:2973750/1‑68 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGTCAATTTTTATAATTTAAACTGACGATTCAAc < 1:12979272/68‑1 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCa > 1:7375099/1‑66 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCa > 1:9462980/1‑66 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCa > 1:11662993/1‑66 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:10125429/68‑1 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:10642573/68‑1 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:27581724/68‑1 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:26834828/68‑1 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:16242126/68‑1 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:25517660/68‑1 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:23375954/68‑1 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:16597678/68‑1 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:21754121/68‑1 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:20517380/68‑1 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:18048938/68‑1 (MQ=255) gCTGAACATGTAGGTCTGATAAGCGCAGCGTATCAGTCAATTTTTATAATTTAAACTGACGATTCAAc < 1:5050589/68‑1 (MQ=37) cTGAACTTGTAGGTCTTATAAGCGCAGCGTATCATGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:34684328/67‑1 (MQ=37) tGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACtt < 1:379719/68‑1 (MQ=255) tGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACtt < 1:9114345/68‑1 (MQ=255) tGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACtt < 1:40098657/68‑1 (MQ=255) aCTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTtat > 1:15168083/1‑68 (MQ=255) aCTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTtat > 1:41874542/1‑68 (MQ=255) cTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTtata > 1:19501136/1‑68 (MQ=255) gTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATc < 1:3632350/68‑1 (MQ=255) tAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCt > 1:26367926/1‑68 (MQ=255) aGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCt < 1:22312847/67‑1 (MQ=255) aGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCt < 1:33641350/67‑1 (MQ=255) | GCGACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCT > CP009273/356859‑356987 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |