| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,263,579 | G→T | 13.8% | noncoding (373/377 nt) | rnpB ← | RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,263,579 | 0 | G | T | 13.8% | 1048.8 / 27.9 | 389 | noncoding (373/377 nt) | rnpB | RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base G (186/136); new base T (21/41); total (210/179) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.52e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 400 total aligned reads displayed.
GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGG > CP009273/3263513‑3263645 | gTCATTCGTCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCGGGTGa > 1:18955740/1‑68 (MQ=255)gTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGa > 1:40840135/1‑68 (MQ=35)gTCATTCATCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGa > 1:6477502/1‑68 (MQ=255) ttatcggtcagtttcacctgatttacgtaaaaacccgcttcggcgggtttttACGTAAATCAGGTGaa < 1:41420513‑M2/16‑1 (MQ=255) cattcttCTTTCTGCCCCTCAAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGa < 1:13619348/66‑1 (MQ=255) cattcatCTTTCTGCCCCTCCAAAATCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGa < 1:26216931/66‑1 (MQ=25) cattcatCTTTCTGCCCCTCCAAAAGCACAAACCCGCCGCAGCGGGTTTTTACGTAAATCAGGTGaa < 1:20515524/67‑1 (MQ=11) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGaa < 1:14503326/67‑1 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGaa > 1:5372307/1‑67 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGa < 1:9115175/66‑1 (MQ=35) tcatCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAAcat > 1:25780938/1‑66 (MQ=255) cggtcagtttcacctgatttacgtAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGATACTg < 1:41952353‑M1/44‑1 (MQ=255) ggtcagtttcacctgatttacgtAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTg < 1:43530231‑M1/44‑1 (MQ=255) catCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa < 1:13257569/68‑1 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:10382202/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:43196540/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:21975982/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:23194078/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:25412010/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:5802729/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:31889670/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:3754076/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:3853601/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:38946672/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:5190608/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:18365864/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTCTTTACGTAAATCAGGTGAAACTGa > 1:20907719/1‑67 (MQ=25) tCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGAcc > 1:33621697/1‑68 (MQ=35) tCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGAcc < 1:19826416/68‑1 (MQ=35) cTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCg > 1:42704325/1‑68 (MQ=35) ttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGAt > 1:35478282/1‑68 (MQ=35) tCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATa > 1:10056080/1‑68 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAg > 1:43465955/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAg > 1:29893230/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAg > 1:6579505/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGc < 1:18707576/68‑1 (MQ=35) gCCACTCAAAAAGCTAAAACCCGCCGTAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGc < 1:37858516/68‑1 (MQ=11) ccacTCAAAAAGCATAAACCCGCCGTAGCGGGTTATTACGTAAATCAGGTTAAACTGACCGATAAGc < 1:27423425/64‑1 (MQ=11) acctgatttacgtAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGcc < 1:24182211‑M1/55‑1 (MQ=255) ccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCgg < 1:781695/68‑1 (MQ=37) tCCAAAATCACAAACCCGCCGCATCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGt < 1:34528321/68‑1 (MQ=14) tCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGt < 1:31142517/68‑1 (MQ=255) tttacgtAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGt < 1:27843384‑M1/59‑1 (MQ=255) aatcAAAAACCCGCCGTAGCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGt < 1:32063109/65‑1 (MQ=17) aaGCATAAACCCGCCGTATCGGTTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:12465082/68‑1 (MQ=17) aaGCACAAACCCGCCGTACCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGt < 1:3389218/68‑1 (MQ=17) aaGCACAAACCCGCCGCATCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:41733462/68‑1 (MQ=17) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:40458775/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:36098068/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:4851383/68‑1 (MQ=255) agtAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGGGTTCTgta < 1:7114087‑M1/65‑2 (MQ=255) gCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCg > 1:8239381/1‑68 (MQ=255) gCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCg > 1:3403787/1‑68 (MQ=255) aCCCGCCTAAGCGGGTTTTTACGTAAATAAGGTGAAACTTAGCGATAAGCCGGGTTGTGTCGTGGACa < 1:28420871/68‑1 (MQ=18) ACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACa > 1:29082875‑M1/1‑68 (MQ=255) ACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACa < 1:14946698‑M1/68‑1 (MQ=255) ACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACa < 1:12634580‑M1/68‑1 (MQ=255) CCGCCGCACCGGGTTATTACGTACATCAGGTCAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:1592196‑M1/1‑68 (MQ=255) CCGCCGAATCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:22708272‑M1/1‑68 (MQ=255) CCGCCGAAGCGGTTTATTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:15303113‑M1/1‑68 (MQ=255) CCGCCGAAGCGGGTTTTTACGTAAATCCGGTGAAACTGACCGATAATGCGGGTTCTGTCGTGGACAGt > 1:18000859‑M1/1‑68 (MQ=255) CCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAg < 1:4128920‑M1/67‑1 (MQ=255) CCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGACGGGTTCTGTCGTGGACAGt > 1:36818792‑M1/1‑68 (MQ=255) CCGCCGAAGCGGGTTTTTACGTAAATCACGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:16403319‑M1/1‑68 (MQ=255) CCGCCGAAGCGGGTTATTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:20014361‑M1/1‑68 (MQ=255) CCGCCGAACCGGTTTTTTACGTAAATCAGGTCAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:24596914‑M1/1‑68 (MQ=255) CGCGGAACCGGTTTTTTACGTAAATCCGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:29423239‑M1/1‑68 (MQ=255) CGCCGAAGCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:11299059‑M1/1‑68 (MQ=255) CGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:8554743‑M1/1‑68 (MQ=255) CGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:12919508‑M1/1‑68 (MQ=255) CGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:16732457‑M1/1‑68 (MQ=255) GCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCa > 1:21619341‑M1/1‑68 (MQ=255) GCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCa > 1:21411107‑M1/1‑68 (MQ=255) atcggttttttACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattcat < 1:2239856‑M2/57‑1 (MQ=255) atcggtttattACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattca < 1:28897106‑M2/56‑1 (MQ=255) accggttttttACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattcat < 1:2169189‑M2/57‑1 (MQ=255) aGCGGTTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattcat < 1:26715596/68‑1 (MQ=255) aGCGGTTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattcat < 1:39675184/68‑1 (MQ=255) aGCGGGTTTTTAGGTAAATCAGGTGAAACAGACAGATAAGCCGGGTTCTGTCGTGGACAGtcattcat < 1:17380111/68‑1 (MQ=25) aGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattcat < 1:6104854/68‑1 (MQ=255) aGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattca < 1:25642860/67‑1 (MQ=255) cgggtttttACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCt > 1:28119658‑M2/10‑68 (MQ=255) gggttattACGTACATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattcat < 1:29148537‑M2/57‑1 (MQ=255) tttttACTTAAATAACGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAgg < 1:32809112‑M2/62‑1 (MQ=255) tACGTAAATCAGGTCAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGc < 1:15473484‑M2/67‑1 (MQ=255) aCGTAAATCCGGTGAAACTCCACGATAATCCGTGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCa < 1:13903413/68‑1 (MQ=25) aCGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCa > 1:30694003/1‑68 (MQ=255) aCGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCa > 1:34359309/1‑68 (MQ=255) cGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCaa > 1:39212887/1‑68 (MQ=255) gTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAAt < 1:37333963/68‑1 (MQ=255) gTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAAt < 1:31566947/68‑1 (MQ=255) aaaTCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAAt < 1:39863128/66‑1 (MQ=255) aaaTCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATc < 1:28630129/67‑1 (MQ=255) tCAGGTTAAACTGAGCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTc < 1:11794064/68‑1 (MQ=255) tCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTc < 1:36546230/68‑1 (MQ=255) tCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTc > 1:41988358/1‑68 (MQ=255) ctggTTAAACTTAGCGATAATGCGTGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCa < 1:4281164/66‑1 (MQ=25) tGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTg > 1:11093631/1‑67 (MQ=255) tGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTg > 1:32592469/1‑67 (MQ=255) tGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTg < 1:23661383/67‑1 (MQ=255) | GTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGG > CP009273/3263513‑3263645 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |