| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,063,843 | A→C | 12.7% | intergenic (‑82/+32) | yihR ← / ← yihS | mutarotase superfamily protein, YihR family/aldose‑ketose isomerase; D‑mannose isomerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,063,843 | 0 | A | C | 12.7% | 1173.7 / 25.1 | 405 | intergenic (‑82/+32) | yihR/yihS | mutarotase superfamily protein, YihR family/aldose‑ketose isomerase; D‑mannose isomerase |
| Reads supporting (aligned to +/- strand): ref base A (308/24); new base C (3/42); total (311/94) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.67e-35 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 477 total aligned reads displayed.
GGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCA > CP009273/4063776‑4063908 | ggCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGgaga < 1:22677318/68‑1 (MQ=255) gCTGATGTCAAACCCAAAAACTGCCCCGGACGGTCCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGagag > 1:140797/1‑68 (MQ=255) gCTGATGTCAAACCCAAAAACTGCACCGTACGGTAACCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGgagat > 1:36266068/1‑67 (MQ=25) gCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGagag > 1:39448551/1‑68 (MQ=255) gCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGagag > 1:15095713/1‑68 (MQ=255) gCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTGT‑GGGG‑TGAGGGTTAGGGagag > 1:39945088/1‑68 (MQ=255) tGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑aa > 1:2752704/1‑68 (MQ=255) gTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑aaa > 1:7550699/1‑68 (MQ=255) cccAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGc > 1:17735825/1‑68 (MQ=255) cccAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGc > 1:240032/1‑68 (MQ=255) cccAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGc > 1:15699752/1‑68 (MQ=255) ccAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGc > 1:38594878/1‑67 (MQ=255) aaaaaCGGCCCGGGCCGGACCCCTCCCCCGTTT‑GGGG‑AGTGGGTTTGGGCGCGGGC‑AAAACCCGCAcc < 1:41255123/68‑1 (MQ=12) aaacCTCCACCGGCCGGGCCCCCCGCCCATTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCAccc < 1:42748020/68‑1 (MQ=18) aaaaCTGCACCGGCCGGACCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCAccc < 1:4709825/68‑1 (MQ=255) aaaaCTCCCCCGGCGGGTCCCCGCGCCCCTTG‑GGGT‑CGTGGTTTAGGGCGCGGGG‑AAAACCCGCAccc < 1:18667554/68‑1 (MQ=255) ccTGCCCCGGACGGTCCCCTCGCCCCTTT‑GGGG‑AGTGGGTTTGGGAGAGGGG‑AAAACCCGCACCCTAt < 1:27892177/67‑1 (MQ=21) aCTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCTCACCCTAt > 1:26912846/1‑68 (MQ=255) aCTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTAt > 1:39586345/1‑68 (MQ=255) aCTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTAt > 1:21213075/1‑68 (MQ=255) aCTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTAt > 1:9253236/1‑68 (MQ=255) aCTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTAt > 1:16377871/1‑68 (MQ=255) aCCGGACGGTCCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCa > 1:35082141/1‑68 (MQ=255) aCCGGACGGTCCCCTCGCCCCTTT‑GGGG‑AGA‑GGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAg > 1:6979041/1‑68 (MQ=255) ccGGCCCCCTCCCCCCTTT‑GGGG‑CGTGGGTTCGGGCGCGGGG‑AAAACCCGCACCCTATTTTCAGATCa < 1:16955790/67‑1 (MQ=21) aCGGTCCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGCGGGG‑AAAACCCGCACACTATTTTCAGATc > 1:42547796/1‑67 (MQ=255) aCGGTCCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCa > 1:18497907/1‑68 (MQ=255) aCGGTCCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCa > 1:37168433/1‑68 (MQ=255) aCGGTCCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCa > 1:7096270/1‑68 (MQ=255) aCGGTCCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCa > 1:15884964/1‑68 (MQ=255) cGGCCCCCTCGCCCCTTT‑GGGT‑TGTGGGTTTGGGAGTGGGG‑AAAACCCGCACCCTATTTTCAGATCAg < 1:29692447/68‑1 (MQ=25) cGGCCCCCTCCCCCTTTT‑GGGG‑TGTGGTTTTGGCAGGGGGC‑AAAACCCGCACCCTATTTTCAGATCAg < 1:29461203/68‑1 (MQ=255) ccccTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTAt > 1:37509602/1‑68 (MQ=255) ccccTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTAt > 1:4098706/1‑68 (MQ=255) ccccTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTAt > 1:36046033/1‑68 (MQ=255) ccccTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTAt > 1:24321207/1‑68 (MQ=255) ccccTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTAt > 1:14879031/1‑68 (MQ=255) cTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTc > 1:13540935/1‑68 (MQ=255) cGCCCCTTT‑GGGG‑AGAGGGTTAGTGAGAGGGC‑AAAACCCGCAAACTAATTTCAGATCACTTATTTCGc > 1:11139992/1‑68 (MQ=21) cGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGc > 1:3307485/1‑68 (MQ=255) cGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGc > 1:23544179/1‑68 (MQ=255) cGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGc > 1:27671837/1‑68 (MQ=255) cGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGc > 1:12260687/1‑68 (MQ=255) gCCCCTTT‑GGGG‑TGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCa < 1:22025046/68‑1 (MQ=255) gCCCCTTT‑GGGG‑AGTGGTTTAGGGTGTGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCa < 1:17595078/68‑1 (MQ=37) cccccTTG‑GGGG‑TGTGGTTTTGGGCGCGGGC‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCa < 1:1167071/67‑1 (MQ=255) ccccTTTGGGGG‑TGTGTGTTGGGGCGGGGCC‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCa < 1:40588273/68‑1 (MQ=255) ccccTTT‑GGGG‑GTTTGGTTTGGGTGGGGGGCAAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCa < 1:28721302/68‑1 (MQ=255) cctttt‑GGGT‑CGTGGGTTTGGGAGCGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCAtt < 1:2839755/65‑1 (MQ=255) cccTTG‑GGGG‑TGTGGTTTTGGGCGCGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCAtt < 1:43159126/68‑1 (MQ=255) ccTTT‑GGGGTTGTGGTTTTGGGCGGGGGC‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCAtt < 1:31843176/68‑1 (MQ=255) ttt‑GGGG‑TTTGGGTTCGGGAGAGGGC‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAat < 1:33895323/68‑1 (MQ=255) ttggggg‑TGTGGGTTTGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAat < 1:2654215/65‑1 (MQ=255) tt‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAata > 1:17178867/1‑68 (MQ=255) gg‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca > 1:20820691/1‑68 (MQ=255) gg‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca > 1:20336403/1‑68 (MQ=255) gg‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca > 1:32795015/1‑68 (MQ=255) gg‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca > 1:6343921/1‑68 (MQ=255) gg‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca > 1:24863563/1‑68 (MQ=255) g‑agaGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCca > 1:8832215/1‑67 (MQ=255) agagGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCcagc > 1:9045157/1‑68 (MQ=255) agagGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCcagc > 1:10233725/1‑68 (MQ=255) agagGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCcagc > 1:6683063/1‑68 (MQ=255) agagGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCcagc > 1:22500752/1‑68 (MQ=255) agagGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCcagc > 1:25284807/1‑68 (MQ=255) agagGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCcagc > 1:13097780/1‑68 (MQ=255) agagGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCcagc > 1:32278435/1‑68 (MQ=255) agagGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCcagc > 1:1260932/1‑68 (MQ=255) ggTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGa > 1:19512903/1‑67 (MQ=255) gTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGAc > 1:21591455/1‑67 (MQ=255) aGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGAccc > 1:573068/1‑66 (MQ=255) ggAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAata > 1:33609104/1‑52 (MQ=255) ggAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:31006196/1‑67 (MQ=255) ggAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:5439149/1‑67 (MQ=255) ggAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:35374459/1‑67 (MQ=255) ggAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:4436578/1‑67 (MQ=255) ggAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:34549945/1‑67 (MQ=255) ggAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:23124110/1‑67 (MQ=255) ggAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:10567661/1‑67 (MQ=255) ggAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:36676573/1‑67 (MQ=255) ggAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:17342534/1‑67 (MQ=255) ggAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:27216185/1‑67 (MQ=255) ggAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:29006444/1‑67 (MQ=255) ggAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:30877393/1‑67 (MQ=255) ggAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:37850539/1‑67 (MQ=255) ggAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCt > 1:38141743/1‑67 (MQ=255) ggAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCAAGCAGACCCGCt > 1:7447920/1‑67 (MQ=255) gagaGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGc > 1:826293/1‑68 (MQ=255) gagaGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGc > 1:10029398/1‑68 (MQ=255) gagaGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGc > 1:29931777/1‑68 (MQ=255) gagaGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGc > 1:39036443/1‑68 (MQ=255) agagGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGc > 1:25592066/1‑67 (MQ=255) agagGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCa > 1:19881844/1‑68 (MQ=255) agagGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCa > 1:41849158/1‑68 (MQ=255) agagGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCa > 1:14484407/1‑68 (MQ=255) agagGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCa > 1:40061426/1‑68 (MQ=255) agagGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCa > 1:30195416/1‑68 (MQ=255) agagGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCa > 1:8576941/1‑68 (MQ=255) agagGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCa > 1:34129061/1‑68 (MQ=255) agagGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCa > 1:3432142/1‑68 (MQ=255) | GGCTGATGTCAAACCCAAAAACTGCACCGGACGGTCCCCTCGCCCCTTT‑GGGG‑AGAGGGTTAGGGAGAGGGG‑AAAACCCGCACCCTATTTTCAGATCAGTTATTTCGCATTAATATCCAGCAGACCCGCTGCA > CP009273/4063776‑4063908 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |